SMTL ID : 2bw9.1

Laue Structure of L29W MbCO

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.68 Å

Oligo State

homo-hexamer

Ligands

6 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 16 residues within 4Å: Chain A: T.39, K.42, F.43, R.45, H.64, V.68, A.71, L.89, S.92, H.93, H.97, I.99, Y.103, L.104, I.107 Ligands: CMO.2 17 PLIP interactions: 17 interactions with chain A, Hydrophobic interactions: A:F.43, A:F.43, A:F.43, A:V.68, A:A.71, A:L.89, A:L.89, A:I.99, A:Y.103, A:L.104, A:I.107 Hydrogen bonds: A:S.92 Salt bridges: A:R.45, A:H.93, A:H.97 pi-Stacking: A:H.97 Metal complexes: A:H.93 HEM.3: 16 residues within 4Å: Chain B: T.39, K.42, F.43, R.45, H.64, V.68, A.71, L.89, S.92, H.93, H.97, I.99, Y.103, L.104, I.107 Ligands: CMO.4 17 PLIP interactions: 17 interactions with chain B, Hydrophobic interactions: B:F.43, B:F.43, B:F.43, B:V.68, B:A.71, B:L.89, B:L.89, B:I.99, B:Y.103, B:L.104, B:I.107 Hydrogen bonds: B:S.92 Salt bridges: B:R.45, B:H.93, B:H.97 pi-Stacking: B:H.97 Metal complexes: B:H.93 HEM.5: 16 residues within 4Å: Chain C: T.39, K.42, F.43, R.45, H.64, V.68, A.71, L.89, S.92, H.93, H.97, I.99, Y.103, L.104, I.107 Ligands: CMO.6 17 PLIP interactions: 17 interactions with chain C, Hydrophobic interactions: C:F.43, C:F.43, C:F.43, C:V.68, C:A.71, C:L.89, C:L.89, C:I.99, C:Y.103, C:L.104, C:I.107 Hydrogen bonds: C:S.92 Salt bridges: C:R.45, C:H.93, C:H.97 pi-Stacking: C:H.97 Metal complexes: C:H.93 HEM.7: 16 residues within 4Å: Chain D: T.39, K.42, F.43, R.45, H.64, V.68, A.71, L.89, S.92, H.93, H.97, I.99, Y.103, L.104, I.107 Ligands: CMO.8 17 PLIP interactions: 17 interactions with chain D, Hydrophobic interactions: D:F.43, D:F.43, D:F.43, D:V.68, D:A.71, D:L.89, D:L.89, D:I.99, D:Y.103, D:L.104, D:I.107 Hydrogen bonds: D:S.92 Salt bridges: D:R.45, D:H.93, D:H.97 pi-Stacking: D:H.97 Metal complexes: D:H.93 HEM.9: 16 residues within 4Å: Chain E: T.39, K.42, F.43, R.45, H.64, V.68, A.71, L.89, S.92, H.93, H.97, I.99, Y.103, L.104, I.107 Ligands: CMO.10 17 PLIP interactions: 17 interactions with chain E, Hydrophobic interactions: E:F.43, E:F.43, E:F.43, E:V.68, E:A.71, E:L.89, E:L.89, E:I.99, E:Y.103, E:L.104, E:I.107 Hydrogen bonds: E:S.92 Salt bridges: E:R.45, E:H.93, E:H.97 pi-Stacking: E:H.97 Metal complexes: E:H.93 HEM.11: 16 residues within 4Å: Chain F: T.39, K.42, F.43, R.45, H.64, V.68, A.71, L.89, S.92, H.93, H.97, I.99, Y.103, L.104, I.107 Ligands: CMO.12 17 PLIP interactions: 17 interactions with chain F, Hydrophobic interactions: F:F.43, F:F.43, F:F.43, F:V.68, F:A.71, F:L.89, F:L.89, F:I.99, F:Y.103, F:L.104, F:I.107 Hydrogen bonds: F:S.92 Salt bridges: F:R.45, F:H.93, F:H.97 pi-Stacking: F:H.97 Metal complexes: F:H.93

6 x CMO: CARBON MONOXIDE(Non-functional Binders)

CMO.2: 5 residues within 4Å: Chain A: W.29, F.43, H.64, V.68 Ligands: HEM.1 No protein-ligand interaction detected (PLIP) CMO.4: 5 residues within 4Å: Chain B: W.29, F.43, H.64, V.68 Ligands: HEM.3 No protein-ligand interaction detected (PLIP) CMO.6: 5 residues within 4Å: Chain C: W.29, F.43, H.64, V.68 Ligands: HEM.5 No protein-ligand interaction detected (PLIP) CMO.8: 5 residues within 4Å: Chain D: W.29, F.43, H.64, V.68 Ligands: HEM.7 No protein-ligand interaction detected (PLIP) CMO.10: 5 residues within 4Å: Chain E: W.29, F.43, H.64, V.68 Ligands: HEM.9 No protein-ligand interaction detected (PLIP) CMO.12: 5 residues within 4Å: Chain F: W.29, F.43, H.64, V.68 Ligands: HEM.11 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schmidt, M. et al., Ligand Migration Pathway and Protein Dynamics in Myoglobin: A Time-Resolved Crystallographic Study on L29W Mbco. Proc.Natl.Acad.Sci.USA (2005)

Release Date

2005-07-13

Peptides

MYOGLOBIN: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
M

B
M

C
M

D
M

E
M

F
M

MYOGLOBIN

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