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SMTL ID : 2bwn.2
(1 other biounit)
5-Aminolevulinate Synthase from Rhodobacter capsulatus
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 2.10 Å
Oligo State
homo-dimer
Ligands
2 x
PLP
:
PYRIDOXAL-5'-PHOSPHATE
(Covalent)
PLP.1:
17 residues within 4Å:
Chain A:
S.114
,
A.115
,
Y.116
,
N.119
,
H.142
,
S.144
,
E.185
,
S.189
,
D.214
,
V.216
,
H.217
,
T.245
,
K.248
,
G.254
Chain B:
F.276
,
S.277
,
T.278
15
PLIP interactions
:
12 interactions with chain A
,
3 interactions with chain B
Hydrophobic interactions:
A:H.142
,
A:V.216
Hydrogen bonds:
A:S.114
,
A:A.115
,
A:Y.116
,
A:N.119
,
A:S.144
,
A:S.189
,
A:S.189
,
A:T.245
,
B:T.278
,
B:T.278
,
B:T.278
Salt bridges:
A:K.248
pi-Stacking:
A:H.142
PLP.4:
17 residues within 4Å:
Chain A:
F.276
,
S.277
,
T.278
Chain B:
S.114
,
A.115
,
Y.116
,
N.119
,
H.142
,
S.144
,
E.185
,
S.189
,
D.214
,
V.216
,
H.217
,
T.245
,
K.248
,
G.254
17
PLIP interactions
:
14 interactions with chain B
,
3 interactions with chain A
Hydrophobic interactions:
B:H.142
,
B:V.216
,
B:K.248
Hydrogen bonds:
B:S.114
,
B:A.115
,
B:Y.116
,
B:N.119
,
B:S.144
,
B:S.189
,
B:S.189
,
B:T.245
,
B:K.248
,
A:T.278
,
A:T.278
,
A:T.278
Salt bridges:
B:K.248
pi-Stacking:
B:H.142
1 x
ACY
:
ACETIC ACID
(Non-functional Binders)
ACY.2:
7 residues within 4Å:
Chain A:
T.83
,
N.85
,
I.86
,
I.275
,
F.276
Chain B:
R.21
,
T.365
7
PLIP interactions
:
2 interactions with chain B
,
5 interactions with chain A
Hydrophobic interactions:
B:T.365
,
A:I.86
,
A:F.276
Salt bridges:
B:R.21
Hydrogen bonds:
A:T.83
,
A:T.83
Water bridges:
A:N.85
2 x
SIN
:
SUCCINIC ACID
(Non-covalent)
SIN.3:
10 residues within 4Å:
Chain A:
R.28
,
F.33
,
P.34
,
V.50
,
W.51
,
C.52
,
G.53
,
D.55
,
T.376
,
H.381
5
PLIP interactions
:
5 interactions with chain A
Hydrogen bonds:
A:G.53
,
A:D.55
,
A:D.55
Salt bridges:
A:R.28
,
A:H.381
SIN.5:
12 residues within 4Å:
Chain B:
R.28
,
F.33
,
P.34
,
V.50
,
W.51
,
C.52
,
G.53
,
D.55
,
Y.56
,
T.376
,
S.378
,
H.381
8
PLIP interactions
:
8 interactions with chain B
Hydrogen bonds:
B:V.50
,
B:G.53
,
B:D.55
,
B:D.55
,
B:T.376
Water bridges:
B:D.55
Salt bridges:
B:R.28
,
B:H.381
1 x
FMT
:
FORMIC ACID
(Non-functional Binders)
FMT.6:
6 residues within 4Å:
Chain A:
R.21
,
T.365
Chain B:
T.83
,
N.85
,
I.86
,
I.275
6
PLIP interactions
:
3 interactions with chain B
,
3 interactions with chain A
Hydrogen bonds:
B:T.83
,
B:N.85
,
A:R.21
,
A:R.21
,
A:T.365
Water bridges:
B:N.85
1 x
CL
:
CHLORIDE ION
(Non-functional Binders)
CL.7:
1 residues within 4Å:
Chain B:
R.157
Ligand excluded by PLIP
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Astner, I. et al., Crystal Structure of 5-Aminolevulinate Synthase, the First Enzyme of Heme Biosynthesis, and its Link to Xlsa in Humans. Embo J. (2005)
Release Date
2005-09-27
Peptides
5-AMINOLEVULINATE SYNTHASE:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
D
B
E
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5-AMINOLEVULINATE SYNTHASE
Related Entries With Identical Sequence
2bwn.1
|
2bwo.1
|
2bwo.2
|
2bwp.1
|
2bwp.2
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