SMTL ID : 2bxv.1

Dual binding mode of a novel series of DHODH inhibitors

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: R.216, V.218, H.219 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.216, A:H.219

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 4 residues within 4Å: Chain A: D.282, T.285, Q.286, R.289 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:D.282, A:Q.286 Salt bridges: A:R.289

1 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.3: 24 residues within 4Å: Chain A: A.66, A.67, G.68, K.71, G.90, S.91, N.116, Y.118, N.152, N.183, K.226, T.254, N.255, T.256, S.276, G.277, L.280, V.304, G.305, G.306, L.326, Y.327, T.328 Ligands: ORO.4 23 PLIP interactions: 23 interactions with chain A Hydrophobic interactions: A:N.116, A:Y.118, A:Y.327, A:Y.327 Hydrogen bonds: A:A.67, A:K.71, A:S.91, A:S.91, A:N.152, A:K.226, A:K.226, A:N.255, A:S.276, A:G.277, A:G.306, A:Y.327, A:T.328, A:T.328 Water bridges: A:A.67, A:G.305, A:G.305, A:V.307, A:V.307

1 x ORO: OROTIC ACID(Non-covalent)

ORO.4: 12 residues within 4Å: Chain A: K.71, N.116, R.117, Y.118, G.119, F.120, N.183, S.186, N.188, N.255, T.256 Ligands: FMN.3 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:F.120 Hydrogen bonds: A:N.116, A:N.116, A:G.119, A:F.120, A:N.183, A:N.188, A:N.255, A:N.255 Water bridges: A:S.186, A:S.186 Salt bridges: A:K.71

1 x 3FT: 2-({[3-FLUORO-3'-(TRIFLUOROMETHOXY)BIPHENYL-4-YL]AMINO}CARBONYL)CYCLOPENT-1-ENE-1-CARBOXYLIC ACID(Non-covalent)

3FT.5: 22 residues within 4Å: Chain A: M.1, Y.9, L.13, M.14, L.17, Q.18, P.23, A.26, H.27, A.30, F.33, T.34, L.38, L.39, F.69, M.82, V.105, R.107, Y.327, L.330, T.331, P.335 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:L.17, A:P.23, A:H.27, A:A.30, A:L.39, A:V.105, A:R.107, A:T.331, A:P.335 Hydrogen bonds: A:Y.9, A:Q.18 Water bridges: A:Y.327 Salt bridges: A:H.27 Halogen bonds: A:L.38

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Baumgartner, R. et al., Dual binding mode of a novel series of DHODH inhibitors. J. Med. Chem. (2006)

Release Date

2006-08-16

Peptides

DIHYDROOROTATE DEHYDROGENASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DIHYDROOROTATE DEHYDROGENASE

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