SMTL ID : 2bxy.1

Is radiation damage dependent on the dose-rate used during macromolecular crystallography data collection

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

2 x GLC- GLC: alpha-D-glucopyranose-(1-1)-alpha-D-glucopyranose(Non-covalent)

GLC-GLC.1: 6 residues within 4Å: Chain A: V.336, T.337, G.340, R.350, G.351, G.352 No protein-ligand interaction detected (PLIP) GLC-GLC.2: 6 residues within 4Å: Chain A: L.313, P.314, D.315, H.382, P.383, A.386 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.315

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.3: 6 residues within 4Å: Chain A: T.337, L.338, G.416, V.417, E.421, Q.563 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:L.338, A:E.421, A:Q.563 Water bridges: A:T.337, A:L.338, A:L.561

2 x GLC: alpha-D-glucopyranose(Non-covalent)

GLC.4: 6 residues within 4Å: Chain A: H.310, D.328, H.332, Y.345, W.371, E.376 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.376 Water bridges: A:H.332, A:Y.349 Salt bridges: A:H.310 GLC.5: 5 residues within 4Å: Chain A: W.41, S.43, E.249, P.250, H.251 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.249, A:H.251 Salt bridges: A:H.251

1 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.6: 8 residues within 4Å: Chain A: W.326, T.327, D.328, V.393, Y.394, C.395, N.398, L.437 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.328, A:D.328, A:N.398 Water bridges: A:C.395

1 x MG: MAGNESIUM ION(Non-covalent)

MG.7: 1 residues within 4Å: Chain A: D.540 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.540, H2O.29

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Leiros, H.-K.S. et al., Is Radiation Damage Dependent on the Dose-Rate Used During Macromolecular Crystallography Data Collection?. Acta Crystallogr.,Sect.D (2006)

Release Date

2006-02-06

Peptides

MALTOOLIGOSYLTREHALOSE TREHALOHYDROLASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

MALTOOLIGOSYLTREHALOSE TREHALOHYDROLASE

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