SMTL ID : 2c03.1 (1 other biounit)

GDP COMPLEX OF SRP GTPASE FFH NG DOMAIN

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.24 Å

Oligo State

monomer

Ligands

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 18 residues within 4Å: Chain A: L.106, Q.107, G.108, S.109, G.110, K.111, T.112, T.113, T.114, K.117, Q.144, T.245, K.246, D.248, G.271, V.272, S.273, E.274 22 PLIP interactions: 22 interactions with chain A Hydrogen bonds: A:G.108, A:S.109, A:G.110, A:G.110, A:K.111, A:T.112, A:T.113, A:T.113, A:Q.144, A:K.246, A:S.273 Water bridges: A:K.111, A:K.117, A:K.117, A:K.246, A:K.246, A:E.274, A:E.274, A:E.274 Salt bridges: A:K.111, A:D.248, A:E.274

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 6 residues within 4Å: Chain A: K.62, Q.63, V.64, S.67, T.69, V.73 2 PLIP interactions: 2 interactions with chain A Water bridges: A:S.67, A:L.68

7 x DIO: 1,4-DIETHYLENE DIOXIDE(Non-covalent)

DIO.3: 12 residues within 4Å: Chain A: G.105, L.106, A.189, G.190, R.191, Q.193, I.194, D.195, L.198, M.199, L.202, F.233 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.191 DIO.4: 4 residues within 4Å: Chain A: L.147, L.148, K.151 Ligands: DIO.8 1 PLIP interactions: 1 interactions with chain A Water bridges: A:K.151 DIO.5: 5 residues within 4Å: Chain A: Q.4, D.250, A.251, R.252 Ligands: DIO.6 1 PLIP interactions: 1 interactions with chain A Water bridges: A:R.252 DIO.6: 5 residues within 4Å: Chain A: M.221, D.250, A.251, R.252 Ligands: DIO.5 No protein-ligand interaction detected (PLIP) DIO.7: 10 residues within 4Å: Chain A: L.38, V.43, V.47, F.51, L.82, A.85, L.86, G.254, L.257, S.258 No protein-ligand interaction detected (PLIP) DIO.8: 10 residues within 4Å: Chain A: T.113, A.116, K.117, L.148, K.151, V.152, E.274, K.275, P.276 Ligands: DIO.4 No protein-ligand interaction detected (PLIP) DIO.9: 10 residues within 4Å: Chain A: L.247, A.270, V.272, E.280, P.281, F.282, Y.283, R.286, L.287, R.290 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.283

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ramirez, U.D. et al., Nucleotide-Binding Flexibility in Ultrahigh-Resolution Structures of the Srp Gtpase Ffh. Acta Crystallogr.,Sect.D (2008)

Release Date

2007-02-13

Peptides

SIGNAL RECOGNITION PARTICLE PROTEIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

SIGNAL RECOGNITION PARTICLE PROTEIN

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