SMTL ID : 2c1i.1

Structure of Streptococcus pneumoniae peptidoglycan deacetylase (SpPgdA) D 275 N Mutant.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.35 Å

Oligo State

monomer

Ligands

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.1: 6 residues within 4Å: Chain A: Y.335, W.353, D.356, W.360, L.383 Ligands: SO4.4 No protein-ligand interaction detected (PLIP)

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 5 residues within 4Å: Chain A: N.243, D.244, H.294, H.298 Ligands: SO4.4 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.244, A:H.294, A:H.298 ZN.3: 2 residues within 4Å: Chain A: E.112, E.114 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.112, A:E.112, A:E.114, H2O.9

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 9 residues within 4Å: Chain A: N.243, D.244, H.294, H.298, P.334, Y.335, H.385 Ligands: MES.1, ZN.2 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.243, A:Y.335 Water bridges: A:G.336 Salt bridges: A:H.294, A:H.298, A:H.385

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Blair, D.E. et al., Structure and metal-dependent mechanism of peptidoglycan deacetylase, a streptococcal virulence factor. Proc. Natl. Acad. Sci. U.S.A. (2005)

Release Date

2005-09-20

Peptides

PEPTIDOGLYCAN GLCNAC DEACETYLASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PEPTIDOGLYCAN GLCNAC DEACETYLASE