SMTL ID : 2c39.2 (3 other biounits)

RNase PH core of the archaeal exosome in complex with ADP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.30 Å

Oligo State

hetero-3-3-mer

Ligands

3 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 12 residues within 4Å: Chain B: T.88, D.89, R.99, L.103, A.134, D.135, A.136, G.137, S.138, R.139, D.182, D.188 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:A.134, B:A.136, B:G.137, B:S.138, B:S.138, B:S.138, B:R.139 Salt bridges: B:R.99, B:R.99, B:R.139, B:R.139 ADP.2: 7 residues within 4Å: Chain D: R.99, A.136, G.137, S.138, R.139, D.182, D.188 9 PLIP interactions: 9 interactions with chain D Hydrogen bonds: D:G.137, D:S.138, D:R.139, D:D.182, D:D.188 Salt bridges: D:R.99, D:R.99, D:R.139, D:R.139 ADP.3: 12 residues within 4Å: Chain F: M.83, T.88, R.99, A.134, D.135, A.136, G.137, S.138, R.139, E.179, D.182, D.188 11 PLIP interactions: 11 interactions with chain F Hydrogen bonds: F:A.134, F:A.136, F:G.137, F:S.138, F:S.138, F:R.139, F:E.179 Salt bridges: F:R.99, F:R.99, F:R.139, F:R.139

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lorentzen, E. et al., Structural Basis of 3' End RNA Recognition and Exoribonucleolytic Cleavage by an Exosome Rnase Ph Core. Mol.Cell (2005)

Release Date

2005-11-23

Peptides

PROBABLE EXOSOME COMPLEX EXONUCLEASE 2: ACE
PROBABLE EXOSOME COMPLEX EXONUCLEASE 1: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

C
I

E
K

B
H

D
J

F
L

PROBABLE EXOSOME COMPLEX EXONUCLEASE 2

PROBABLE EXOSOME COMPLEX EXONUCLEASE 1

Related Entries With Identical Sequence