- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.32 Å
- Oligo State
- homo-dimer
- Ligands
- 6 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
- 2 x 2TP: 2-(3-{[4-(HYDROXYAMINO)-2-METHYLPYRIMIDIN-5-YL]METHYL}-4-METHYL-2,3-DIHYDRO-1,3-THIAZOL-5-YL)ETHYL TRIHYDROGEN DIPHOSPHATE(Non-covalent)
2TP.4: 25 residues within 4Å:- Chain A: Y.27, P.28, I.29, E.63, Q.87, L.91, E.816, T.837, G.838, C.839, F.868, E.869, G.961, D.962, G.963, W.964, I.968, T.990, V.992, Y.993, S.994, N.995, T.996
- Ligands: PYR.5, MG.6
24 PLIP interactions:24 interactions with chain A- Hydrophobic interactions: A:P.28, A:I.29, A:Q.87, A:L.91, A:F.868, A:F.868, A:F.868, A:I.968, A:Y.993, A:Y.993, A:T.996
- Hydrogen bonds: A:C.839, A:F.868, A:G.961, A:D.962, A:G.963, A:W.964, A:V.992, A:S.994, A:N.995
- Water bridges: A:S.840, A:S.840, A:T.990
- pi-Stacking: A:F.868
2TP.11: 25 residues within 4Å:- Chain B: Y.27, P.28, I.29, E.63, Q.87, L.91, E.816, T.837, G.838, C.839, F.868, E.869, G.961, D.962, G.963, W.964, I.968, T.990, V.992, Y.993, S.994, N.995, T.996
- Ligands: PYR.12, MG.13
24 PLIP interactions:24 interactions with chain B- Hydrophobic interactions: B:P.28, B:I.29, B:Q.87, B:L.91, B:F.868, B:F.868, B:F.868, B:I.968, B:Y.993, B:T.996
- Hydrogen bonds: B:C.839, B:F.868, B:G.961, B:D.962, B:G.963, B:W.964, B:S.994, B:N.995
- Water bridges: B:E.816, B:T.837, B:S.840, B:S.840, B:T.990
- pi-Stacking: B:F.868
- 2 x PYR: PYRUVIC ACID(Non-covalent)
PYR.5: 11 residues within 4Å:- Chain A: I.29, T.30, R.113, L.120, I.122, T.837, I.842, N.995, T.996
- Chain B: M.1201
- Ligands: 2TP.4
8 PLIP interactions:8 interactions with chain A- Hydrophobic interactions: A:I.122, A:T.837, A:I.842
- Hydrogen bonds: A:T.30, A:R.113, A:R.113, A:N.995
- Salt bridges: A:R.113
PYR.12: 9 residues within 4Å:- Chain A: M.1201
- Chain B: I.29, T.30, R.113, L.120, I.122, N.995, T.996
- Ligands: 2TP.11
7 PLIP interactions:7 interactions with chain B- Hydrophobic interactions: B:I.122
- Hydrogen bonds: B:T.30, B:T.30, B:R.113, B:R.113, B:N.995
- Salt bridges: B:R.113
- 2 x MG: MAGNESIUM ION(Non-covalent)
MG.6: 5 residues within 4Å:- Chain A: D.962, T.990, V.992, S.994
- Ligands: 2TP.4
4 PLIP interactions:3 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.962, A:T.990, A:V.992, H2O.11
MG.13: 5 residues within 4Å:- Chain B: D.962, T.990, V.992, S.994
- Ligands: 2TP.11
4 PLIP interactions:3 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:D.962, B:T.990, B:V.992, H2O.27
- 2 x CA: CALCIUM ION(Non-covalent)
CA.7: 8 residues within 4Å:- Chain A: D.982, V.983, N.984, A.1055, E.1056, F.1058, G.1060, S.1062
3 PLIP interactions:3 interactions with chain A- Metal complexes: A:D.982, A:F.1058, A:G.1060
CA.14: 8 residues within 4Å:- Chain B: D.982, V.983, N.984, A.1055, E.1056, F.1058, G.1060, S.1062
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:D.982, B:A.1055, B:F.1058, B:G.1060
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Cavazza, C. et al., Flexibility of Thiamine Diphosphate Revealed by Kinetic Crystallographic Studies of the Reaction of Pyruvate-Ferredoxin Oxidoreductase with Pyruvate. Structure (2006)
- Release Date
- 2006-02-15
- Peptides
- PYRUVATE-FERREDOXIN OXIDOREDUCTASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.32 Å
- Oligo State
- homo-dimer
- Ligands
- 6 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
- 2 x 2TP: 2-(3-{[4-(HYDROXYAMINO)-2-METHYLPYRIMIDIN-5-YL]METHYL}-4-METHYL-2,3-DIHYDRO-1,3-THIAZOL-5-YL)ETHYL TRIHYDROGEN DIPHOSPHATE(Non-covalent)
- 2 x PYR: PYRUVIC ACID(Non-covalent)
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 2 x CA: CALCIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Cavazza, C. et al., Flexibility of Thiamine Diphosphate Revealed by Kinetic Crystallographic Studies of the Reaction of Pyruvate-Ferredoxin Oxidoreductase with Pyruvate. Structure (2006)
- Release Date
- 2006-02-15
- Peptides
- PYRUVATE-FERREDOXIN OXIDOREDUCTASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B