Toggle navigation
Modelling
myWorkspace
Alignment Mode
User Template Mode
DeepView Project Mode
Modelling API
Template Library
Repository
SWISS-MODEL Repository
Repository API
3D-Beacons API
Annotation Projects
TBvar3D
Tools
Structure Assessment
Structure Comparison
QMEAN
Documentation
SWISS-MODEL
Examples
Video Tutorial
New Features
SWISS-MODEL Repository
QMEAN
Structure Assessment
Structure Comparison
TBvar3D
Protein Structure Course
References
Log in
Create Account
SMTL ID : 2c4v.1
H. pylori type II DHQase in complex with citrate
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 2.50 Å
Oligo State
homo-dimer
Ligands
2 x
CIT
:
CITRIC ACID
(Non-functional Binders)
CIT.1:
12 residues within 4Å:
Chain A:
R.17
,
Y.22
,
N.76
,
G.78
,
A.79
,
H.82
,
H.102
,
L.103
,
T.104
,
I.106
,
R.109
,
R.113
15
PLIP interactions
:
15 interactions with chain A
Hydrophobic interactions:
A:I.106
Hydrogen bonds:
A:N.76
,
A:N.76
,
A:G.78
,
A:L.103
,
A:T.104
,
A:R.109
Water bridges:
A:P.9
,
A:P.9
Salt bridges:
A:R.17
,
A:H.82
,
A:H.102
,
A:R.109
,
A:R.113
,
A:R.113
CIT.2:
12 residues within 4Å:
Chain B:
R.17
,
Y.22
,
N.76
,
G.78
,
A.79
,
H.82
,
H.102
,
L.103
,
T.104
,
I.106
,
R.109
,
R.113
17
PLIP interactions
:
17 interactions with chain B
Hydrophobic interactions:
B:I.106
Hydrogen bonds:
B:Y.22
,
B:N.76
,
B:N.76
,
B:G.78
,
B:H.102
,
B:L.103
,
B:T.104
,
B:R.109
Water bridges:
B:P.9
,
B:P.9
Salt bridges:
B:R.17
,
B:H.82
,
B:H.102
,
B:R.109
,
B:R.113
,
B:R.113
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Robinson, D.A. et al., Crystal Structures of Helicobacter Pylori Type II Dehydroquinase Inhibitor Complexes: New Directions for Inhibitor Design. J.Med.Chem. (2006)
Release Date
2006-02-22
Peptides
3-DEHYDROQUINATE DEHYDRATASE:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
A
Export Alignment
FASTA format
Clustal Format
PNG Image
Secondary Structure
None
DSSP
PSIPRED
SSpro
Colour Scheme
Fade Mismatches
Enhance Mismatches
Chain
Unique Chain
Rainbow
2° Structure
Bfactor
Bfactor Range
SOA
Entropy
Clustal
Hydrophobic
Size
Charged
Polar
Proline
Ser/Thr
Cysteine
Aliphatic
Aromatic
No Colour
Background
3D Viewer
NGL
PV
2D
FASTA
Multi FASTA
ClustalW
PNG
3-DEHYDROQUINATE DEHYDRATASE
Toggle Identical (AB)
Related Entries With Identical Sequence
1j2y.1
|
2wks.1
|
2xb9.1
|
2xd9.1
|
2xda.1
|
4b6r.1
|
4b6s.1
Cartoon
Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog
Background
Transparent
Resolution
Low
Medium
High
Extreme