SMTL ID : 2c53.1

A comparative study of uracil DNA glycosylases from human and herpes simplex virus type 1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x DUR: 2'-DEOXYURIDINE(Non-covalent)

DUR.1: 13 residues within 4Å: Chain A: G.86, Q.87, N.88, P.89, Y.90, L.99, A.100, F.101, S.112, N.147, N.210, S.212, P.213 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:Q.87, A:N.88, A:F.101, A:N.147, A:N.147, A:N.210 Water bridges: A:N.210, A:S.212 pi-Stacking: A:Y.90, A:F.101

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 2 residues within 4Å: Chain A: L.214, K.216 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.216 Water bridges: A:K.216 GOL.3: 5 residues within 4Å: Chain A: N.115, A.118, P.218, F.219, G.220 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:F.219, A:G.220 Water bridges: A:N.115, A:P.211 GOL.4: 3 residues within 4Å: Chain A: R.197, D.199, P.200 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.197, A:D.199 GOL.5: 4 residues within 4Å: Chain A: P.181, R.235, S.236, I.237 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:P.181, A:S.236

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Krusong, K. et al., A Comparative Study of Uracil-DNA Glycosylases from Human and Herpes Simplex Virus Type 1. J.Biol.Chem. (2006)

Release Date

2005-11-28

Peptides

URACIL DNA GLYCOSYLASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

URACIL DNA GLYCOSYLASE

Related Entries With Identical Sequence