- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.40 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x GDC: GUANOSINE-5'-DIPHOSPHATE-BETA-L-GALACTOSE(Non-covalent)
- 2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
NAD.2: 28 residues within 4Å:- Chain A: G.36, G.38, G.39, F.40, I.41, D.60, W.61, K.62, V.79, D.80, L.81, R.82, L.100, A.101, A.102, D.103, M.104, I.124, A.143, S.144, S.145, F.176, K.180, F.203, N.205, I.206, K.219
- Ligands: GDC.1
24 PLIP interactions:24 interactions with chain A- Hydrophobic interactions: A:F.203
- Hydrogen bonds: A:G.39, A:F.40, A:I.41, A:W.61, A:D.80, A:L.81, A:R.82, A:L.100, A:A.102, A:K.180, A:I.206, A:I.206, A:K.219
- Water bridges: A:G.39, A:A.42, A:T.212, A:T.212, A:T.212, A:T.212, A:K.219
- pi-Stacking: A:W.61, A:W.61, A:F.203
NAD.16: 29 residues within 4Å:- Chain B: G.36, G.38, G.39, F.40, I.41, D.60, W.61, K.62, V.79, D.80, L.81, R.82, L.100, A.101, A.102, D.103, M.104, I.124, A.143, S.144, S.145, F.176, K.180, F.203, N.205, I.206, K.219, R.373
- Ligands: GDC.15
25 PLIP interactions:25 interactions with chain B- Hydrophobic interactions: B:F.203
- Hydrogen bonds: B:G.38, B:F.40, B:I.41, B:W.61, B:D.80, B:D.80, B:L.81, B:R.82, B:L.100, B:A.102, B:K.180, B:I.206, B:I.206, B:K.219, B:R.373
- Water bridges: B:A.42, B:T.212, B:T.212, B:T.212, B:T.212, B:R.373
- pi-Stacking: B:W.61, B:W.61, B:F.203
- 17 x FMT: FORMIC ACID(Non-functional Binders)
FMT.3: 4 residues within 4Å:- Chain A: T.15, Y.16, K.17, E.18
Ligand excluded by PLIPFMT.4: 6 residues within 4Å:- Chain A: V.79, D.80, N.86, G.370, S.371, L.372
Ligand excluded by PLIPFMT.5: 2 residues within 4Å:- Chain A: G.362, T.363
Ligand excluded by PLIPFMT.6: 4 residues within 4Å:- Chain A: R.21, R.48, D.251, V.254
Ligand excluded by PLIPFMT.7: 3 residues within 4Å:- Chain A: T.212, W.213, K.214
Ligand excluded by PLIPFMT.8: 2 residues within 4Å:- Chain A: E.164, S.165
Ligand excluded by PLIPFMT.9: 3 residues within 4Å:- Chain A: N.191, K.192, R.266
Ligand excluded by PLIPFMT.10: 2 residues within 4Å:- Chain A: T.158, N.159
Ligand excluded by PLIPFMT.11: 3 residues within 4Å:- Chain A: R.259, G.320, W.321
Ligand excluded by PLIPFMT.12: 6 residues within 4Å:- Chain A: D.103, V.116, N.120, R.217, Q.364, R.373
Ligand excluded by PLIPFMT.13: 5 residues within 4Å:- Chain A: N.64, E.65, H.66, M.67, G.377
Ligand excluded by PLIPFMT.14: 7 residues within 4Å:- Chain A: K.214, G.215, R.226, L.354, Y.355, S.357, K.359
Ligand excluded by PLIPFMT.17: 2 residues within 4Å:- Chain B: D.274, N.309
Ligand excluded by PLIPFMT.18: 5 residues within 4Å:- Chain B: L.19, R.21, R.48, D.251, V.254
Ligand excluded by PLIPFMT.19: 6 residues within 4Å:- Chain B: V.79, D.80, N.86, G.370, S.371, L.372
Ligand excluded by PLIPFMT.20: 2 residues within 4Å:- Chain B: E.164, S.165
Ligand excluded by PLIPFMT.21: 7 residues within 4Å:- Chain B: K.214, G.215, R.226, L.354, Y.355, S.357, K.359
Ligand excluded by PLIP- 1 x BTB: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Major, L.L. et al., Structure and Function of Gdp-Mannose-3',5'-Epimerase: An Enzyme which Performs Three Chemical Reactions at the Same Active Site. J.Am.Chem.Soc. (2005)
- Release Date
- 2005-11-14
- Peptides
- GDP-MANNOSE-3', 5'-EPIMERASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.40 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x GDC: GUANOSINE-5'-DIPHOSPHATE-BETA-L-GALACTOSE(Non-covalent)
- 2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- 17 x FMT: FORMIC ACID(Non-functional Binders)
- 1 x BTB: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Major, L.L. et al., Structure and Function of Gdp-Mannose-3',5'-Epimerase: An Enzyme which Performs Three Chemical Reactions at the Same Active Site. J.Am.Chem.Soc. (2005)
- Release Date
- 2005-11-14
- Peptides
- GDP-MANNOSE-3', 5'-EPIMERASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B