SMTL ID : 2c5d.1

Structure of a minimal Gas6-Axl complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.30 Å

Oligo State

hetero-2-2-mer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 6 residues within 4Å: Chain A: R.52, R.54, G.82, G.83, H.84, N.164 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.54, A:R.54 NAG-NAG.2: 7 residues within 4Å: Chain B: R.52, R.54, G.82, G.83, H.84, N.164 Chain D: P.32 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.54, B:R.54

2 x CA: CALCIUM ION(Non-covalent)

CA.3: 4 residues within 4Å: Chain A: D.73, E.75, R.184, D.400 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.73, A:D.73, A:E.75, A:R.184, A:D.400 CA.4: 4 residues within 4Å: Chain B: D.73, E.75, R.184, D.400 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.73, B:D.73, B:E.75, B:R.184, B:D.400

2 x NI: NICKEL (II) ION(Non-covalent)

NI.5: 1 residues within 4Å: Chain C: H.91 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:H.91 NI.7: 1 residues within 4Å: Chain D: H.91 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:H.91

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.6: 4 residues within 4Å: Chain C: R.116, P.123, F.124, N.125 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:N.125, C:N.125 Salt bridges: C:R.116

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sasaki, T. et al., Structural Basis for Gas6-Axl Signalling. Embo J. (2006)

Release Date

2005-12-19

Peptides

GROWTH-ARREST-SPECIFIC PROTEIN 6 PRECURSOR: AB
TYROSINE-PROTEIN KINASE RECEPTOR UFO: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

GROWTH-ARREST-SPECIFIC PROTEIN 6 PRECURSOR

TYROSINE-PROTEIN KINASE RECEPTOR UFO

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