- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x GDD: GUANOSINE-5'-DIPHOSPHATE-ALPHA-D-MANNOSE(Non-covalent)
- 10 x FMT: FORMIC ACID(Non-functional Binders)
FMT.2: 6 residues within 4Å:- Chain A: T.158, N.159, V.160, S.161, M.276, N.309
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:N.159, A:V.160, A:S.161, A:N.309
FMT.3: 2 residues within 4Å:- Chain A: W.337, E.340
No protein-ligand interaction detected (PLIP)FMT.4: 6 residues within 4Å:- Chain A: V.79, D.80, N.86, G.370, S.371, L.372
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:D.80, A:N.86
FMT.5: 3 residues within 4Å:- Chain A: Y.16, K.17, E.18
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:K.17, A:E.18
FMT.6: 4 residues within 4Å:- Chain A: R.21, R.48, D.251, V.254
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:R.21, A:R.48, A:E.255
- Water bridges: A:R.47, A:D.251
FMT.10: 3 residues within 4Å:- Chain B: Q.111, S.112, H.114
2 PLIP interactions:2 interactions with chain B- Water bridges: B:Q.111, B:Q.111
FMT.11: 7 residues within 4Å:- Chain B: K.214, G.215, R.226, L.354, Y.355, S.357, K.359
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:G.215, B:L.354
- Water bridges: B:S.357, B:K.359
FMT.12: 4 residues within 4Å:- Chain B: E.185, K.188, H.189, K.192
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:E.185, B:K.192
- Water bridges: B:H.189
FMT.13: 2 residues within 4Å:- Chain B: E.164, S.165
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:E.164, B:S.165
- Water bridges: B:S.165, B:S.165
FMT.14: 3 residues within 4Å:- Chain B: T.212, W.213, K.214
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:W.213, B:K.214, B:K.214
- Water bridges: B:K.214
- 2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
NAD.7: 27 residues within 4Å:- Chain A: G.36, G.38, G.39, F.40, I.41, D.60, W.61, K.62, V.79, D.80, L.81, R.82, L.100, A.101, A.102, D.103, M.104, I.124, A.143, S.144, S.145, Y.176, K.180, F.203, N.205, I.206
- Ligands: GDD.1
20 PLIP interactions:20 interactions with chain A- Hydrophobic interactions: A:F.203
- Hydrogen bonds: A:G.38, A:F.40, A:I.41, A:W.61, A:D.80, A:L.81, A:R.82, A:L.100, A:A.102, A:K.180, A:I.206, A:I.206
- Water bridges: A:A.42, A:T.212, A:T.212, A:T.212, A:T.212
- pi-Stacking: A:W.61, A:W.61
NAD.9: 28 residues within 4Å:- Chain B: G.36, G.38, G.39, F.40, I.41, D.60, W.61, K.62, V.79, D.80, L.81, R.82, L.100, A.101, A.102, D.103, M.104, I.124, A.143, S.144, S.145, Y.176, K.180, F.203, N.205, I.206, R.373
- Ligands: GDD.8
19 PLIP interactions:19 interactions with chain B- Hydrophobic interactions: B:F.203
- Hydrogen bonds: B:G.38, B:F.40, B:I.41, B:W.61, B:D.80, B:D.80, B:L.81, B:L.100, B:A.102, B:K.180, B:I.206, B:I.206, B:R.373
- Water bridges: B:A.42, B:T.212
- pi-Stacking: B:W.61, B:W.61, B:F.203
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Major, L.L. et al., Structure and Function of Gdp-Mannose-3',5'-Epimerase: An Enzyme which Performs Three Chemical Reactions at the Same Active Site. J.Am.Chem.Soc. (2005)
- Release Date
- 2005-11-14
- Peptides
- GDP-MANNOSE-3', 5'-EPIMERASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x GDD: GUANOSINE-5'-DIPHOSPHATE-ALPHA-D-MANNOSE(Non-covalent)
- 10 x FMT: FORMIC ACID(Non-functional Binders)
- 2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Major, L.L. et al., Structure and Function of Gdp-Mannose-3',5'-Epimerase: An Enzyme which Performs Three Chemical Reactions at the Same Active Site. J.Am.Chem.Soc. (2005)
- Release Date
- 2005-11-14
- Peptides
- GDP-MANNOSE-3', 5'-EPIMERASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B