SMTL ID : 2c6h.2 (1 other biounit)

Crystal structure of YC-17-bound cytochrome P450 PikC (CYP107L1)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 28 residues within 4Å: Chain A: K.92, M.112, L.113, H.120, R.124, F.131, I.177, L.260, A.263, G.264, T.267, T.268, L.271, P.309, V.310, A.313, T.314, R.316, A.366, F.367, G.368, I.371, H.372, C.374, I.375, G.376, A.380 Ligands: PXI.2 16 PLIP interactions: 16 interactions with chain A, Hydrophobic interactions: A:L.113, A:F.131, A:I.177, A:L.271, A:P.309, A:I.375, A:A.380 Hydrogen bonds: A:T.314 Water bridges: A:H.372 Salt bridges: A:K.92, A:H.120, A:R.124, A:R.316, A:H.372 pi-Stacking: A:F.367 Metal complexes: A:C.374

1 x PXI: 4-{[4-(DIMETHYLAMINO)-3-HYDROXY-6-METHYLTETRAHYDRO-2H-PYRAN-2-YL]OXY}-12-ETHYL-3,5,7,11-TETRAMETHYLOXACYCLODODEC-9-ENE-2,8-DIONE(Non-covalent)

PXI.2: 20 residues within 4Å: Chain A: W.94, L.101, E.105, L.108, N.109, L.113, E.114, F.198, V.199, H.258, V.262, A.263, E.266, T.267, V.310, S.312, T.314, N.412, M.414 Ligands: HEM.1 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.108, A:F.198, A:F.198, A:V.262, A:A.263, A:T.267, A:V.310, A:T.314 Water bridges: A:E.266 Salt bridges: A:E.114

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 1 residues within 4Å: Chain A: R.82 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.82

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sherman, D.H. et al., The Structural Basis for Substrate Anchoring, Active Site Selectivity, and Product Formation by P450 Pikc from Streptomyces Venezuelae. J.Biol.Chem. (2006)

Release Date

2006-07-03

Peptides

CYTOCHROME P450 MONOOXYGENASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

CYTOCHROME P450 MONOOXYGENASE

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