- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.75 Å
- Oligo State
- homo-pentamer
- Ligands
- 5 x PUG: 3-(1,3,7-TRIHYDRO-9-D-RIBITYL-2,6,8-PURINETRIONE-7-YL)(Non-covalent)
- 9 x K: POTASSIUM ION(Non-covalent)
K.2: 3 residues within 4Å:- Chain A: A.70, H.73, T.110
1 PLIP interactions:1 interactions with chain A- Metal complexes: A:H.73
K.3: 3 residues within 4Å:- Chain A: E.155, L.156, R.157
1 PLIP interactions:1 interactions with chain A- Metal complexes: A:L.156
K.6: 3 residues within 4Å:- Chain B: A.70, H.73, T.110
2 PLIP interactions:2 interactions with chain B- Metal complexes: B:A.70, B:H.73
K.9: 3 residues within 4Å:- Chain C: A.70, H.73, T.110
3 PLIP interactions:2 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:A.70, C:H.73, H2O.6
K.10: 4 residues within 4Å:- Chain C: E.155, L.156, R.157, H.159
1 PLIP interactions:1 interactions with chain C- Metal complexes: C:R.157
K.14: 3 residues within 4Å:- Chain D: A.70, H.73, T.110
1 PLIP interactions:1 interactions with chain D- Metal complexes: D:A.70
K.15: 3 residues within 4Å:- Chain D: E.155, L.156, R.157
No protein-ligand interaction detected (PLIP)K.18: 3 residues within 4Å:- Chain E: A.70, H.73, T.110
2 PLIP interactions:2 interactions with chain E- Metal complexes: E:A.70, E:H.73
K.19: 3 residues within 4Å:- Chain E: E.155, L.156, R.157
No protein-ligand interaction detected (PLIP)- 5 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.4: 5 residues within 4Å:- Chain A: G.85, Q.86, T.87, H.89
- Chain B: R.128
5 PLIP interactions:4 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:Q.86, A:T.87
- Water bridges: A:G.85, A:G.85
- Salt bridges: B:R.128
PO4.7: 5 residues within 4Å:- Chain B: G.85, Q.86, T.87, H.89
- Chain C: R.128
6 PLIP interactions:4 interactions with chain B, 2 interactions with chain C- Hydrogen bonds: B:G.85, B:Q.86, B:T.87
- Water bridges: B:H.89, C:K.138
- Salt bridges: C:R.128
PO4.11: 4 residues within 4Å:- Chain C: G.85, Q.86, T.87
- Chain D: R.128
6 PLIP interactions:5 interactions with chain C, 1 interactions with chain D- Hydrogen bonds: C:G.85, C:Q.86, C:T.87, C:T.87, C:T.87
- Salt bridges: D:R.128
PO4.16: 5 residues within 4Å:- Chain D: G.85, Q.86, T.87, H.89
- Chain E: R.128
4 PLIP interactions:1 interactions with chain E, 3 interactions with chain D- Salt bridges: E:R.128
- Hydrogen bonds: D:G.85, D:Q.86, D:T.87
PO4.20: 5 residues within 4Å:- Chain A: R.128
- Chain E: G.85, Q.86, T.87, H.89
4 PLIP interactions:3 interactions with chain E, 1 interactions with chain A- Hydrogen bonds: E:G.85, E:Q.86, E:T.87
- Salt bridges: A:R.128
- 1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Morgunova, E. et al., Structural and Thermodynamic Insights Into the Binding Mode of Five Novel Inhibitors of Lumazine Synthase from Mycobacterium Tuberculosis. FEBS J. (2006)
- Release Date
- 2006-12-13
- Peptides
- 6,7-DIMETHYL-8-RIBITYLLUMAZINE SYNTHASE: ABCDE
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
E
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.75 Å
- Oligo State
- homo-pentamer
- Ligands
- 5 x PUG: 3-(1,3,7-TRIHYDRO-9-D-RIBITYL-2,6,8-PURINETRIONE-7-YL)(Non-covalent)
- 9 x K: POTASSIUM ION(Non-covalent)
- 5 x PO4: PHOSPHATE ION(Non-functional Binders)
- 1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Morgunova, E. et al., Structural and Thermodynamic Insights Into the Binding Mode of Five Novel Inhibitors of Lumazine Synthase from Mycobacterium Tuberculosis. FEBS J. (2006)
- Release Date
- 2006-12-13
- Peptides
- 6,7-DIMETHYL-8-RIBITYLLUMAZINE SYNTHASE: ABCDE
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
E