SMTL ID : 2cb3.1 (3 other biounits)

Crystal structure of peptidoglycan recognition protein-LE in complex with tracheal cytotoxin (monomeric diaminopimelic acid-type peptidoglycan)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: E.40, S.41, G.107, C.108, F.109, E.112 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.41, A:S.41, A:C.108

1 x MLD: GLCNAC(BETA1-4)-MURNAC(1,6-ANHYDRO)-L-ALA-GAMMA-D-GLU-MESO-A2PM-D-ALA(Non-covalent)

MLD.2: 22 residues within 4Å: Chain A: H.36, T.37, M.55, F.58, H.59, R.63, W.65, N.66, Y.70, R.84, A.91, H.92, T.93, L.94, N.97, M.110, H.144, N.148, S.149, T.150, E.151, S.152 23 PLIP interactions: 23 interactions with chain A Hydrophobic interactions: A:W.65, A:W.65, A:A.91, A:E.151 Hydrogen bonds: A:T.37, A:N.66, A:D.67, A:Y.70, A:H.92, A:H.92, A:L.94, A:N.97, A:R.98, A:E.151, A:S.152 Water bridges: A:G.95, A:G.95, A:S.149, A:T.150, A:T.150 Salt bridges: A:R.63, A:R.84, A:H.144

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lim, J.-H. et al., Structural Basis for Preferential Recognition of Diaminopimelic Acid-Type Peptidoglycan by a Subset of Peptidoglycan Recognition Proteins. J.Biol.Chem. (2006)

Release Date

2006-01-26

Peptides

PEPTIDOGLYCAN-RECOGNITION PROTEIN-LE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PEPTIDOGLYCAN-RECOGNITION PROTEIN-LE

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