SMTL ID : 2cb8.1 (1 other biounit)

High resolution crystal structure of liganded human L-ACBP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

2 x MYA: TETRADECANOYL-COA(Non-covalent)

MYA.1: 12 residues within 4Å: Chain A: A.10, R.14, I.28, Y.29, Y.32, K.33, K.55, Y.74 Ligands: ZN.3, ZN.6, MYA.7, SO4.8 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:R.14, A:Y.29, A:Y.74 Water bridges: A:Y.32, A:K.33, A:K.33, A:K.33, A:K.55, A:K.55 Salt bridges: A:K.33, A:K.55, A:K.55 pi-Stacking: A:Y.32, A:Y.32 MYA.7: 10 residues within 4Å: Chain A: K.19, D.22, M.25, T.51 Ligands: MYA.1, ZN.3, ZN.4, ZN.6, SO4.8, ZN.9 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.19, A:K.19 Water bridges: A:R.14, A:T.51

6 x ZN: ZINC ION(Non-covalent)(Non-functional Binders)

ZN.2: 2 residues within 4Å: Chain A: H.31, L.62 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.31, H2O.6, H2O.6 ZN.3: 4 residues within 4Å: Ligands: MYA.1, MYA.7, SO4.8, ZN.9 No protein-ligand interaction detected (PLIP) ZN.4: 2 residues within 4Å: Chain A: D.22 Ligands: MYA.7 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.22, A:D.22 ZN.5: 2 residues within 4Å: Chain A: S.2, E.68 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.68, H2O.6 ZN.6: 3 residues within 4Å: Ligands: MYA.1, MYA.7, SO4.8 No protein-ligand interaction detected (PLIP) ZN.9: 3 residues within 4Å: Ligands: ZN.3, MYA.7, SO4.8 No protein-ligand interaction detected (PLIP)

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.8: 5 residues within 4Å: Ligands: MYA.1, ZN.3, ZN.6, MYA.7, ZN.9 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Taskinen, J.P. et al., High Resolution Crystal Structures of Unliganded and Liganded Human Liver Acbp Reveal a New Mode of Binding for the Acyl-Coa Ligand. Proteins: Struct., Funct., Bioinf. (2007)

Release Date

2006-10-25

Peptides

ACYL-COA-BINDING PROTEIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ACYL-COA-BINDING PROTEIN

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