SMTL ID : 2cbn.1

Crystal structure of ZipD from Escherichia coli

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

homo-dimer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.65, H.67, H.142, D.213 Ligands: ZN.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.67, A:H.142, A:D.213 ZN.2: 5 residues within 4Å: Chain A: D.69, H.70, D.213, H.271 Ligands: ZN.1 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.69, A:H.70, A:D.213, A:H.271 ZN.3: 5 residues within 4Å: Chain B: H.65, H.67, H.142, D.213 Ligands: ZN.4 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.67, B:H.142, B:D.213 ZN.4: 5 residues within 4Å: Chain B: D.69, H.70, D.213, H.271 Ligands: ZN.3 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:D.69, B:H.70, B:D.213, B:H.271

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kostelecky, B. et al., The Crystal Structure of the Zinc Phosphodiesterase from Escherichia Coli Provides Insight Into Function and Cooperativity of Trnase Z-Family Proteins. J.Bacteriol. (2006)

Release Date

2006-02-15

Peptides

RIBONUCLEASE Z: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

RIBONUCLEASE Z