SMTL ID : 2cc3.1

Structure of Agrobacterium tumefaciens VirB8 protein

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

2 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.1: 6 residues within 4Å: Chain A: Y.32, L.36, T.125 Chain B: W.16, E.17, R.20 6 PLIP interactions: 5 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:E.17, B:R.20 Hydrogen bonds: B:W.16 Water bridges: B:E.17, B:R.20, A:T.125 MPD.2: 8 residues within 4Å: Chain B: S.14, E.17, L.21, F.40, T.125, N.126, L.130, V.132 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:L.21, B:F.40, B:F.40, B:N.126, B:L.130, B:V.132 Hydrogen bonds: B:E.17, B:E.17, B:N.126

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bailey, S. et al., Agrobacterium Tumefaciens Virb8 Structure Reveals Potential Protein-Protein Interactions Sites. Proc.Natl.Acad.Sci.USA (2006)

Release Date

2006-01-30

Peptides

PROTEIN VIRB8: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

PROTEIN VIRB8