SMTL ID : 2ccg.1

Crystal structure of His-tagged S. aureus thymidylate kinase complexed with thymidine monophosphate (TMP)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x TMP: THYMIDINE-5'-PHOSPHATE(Non-covalent)

TMP.1: 12 residues within 4Å: Chain A: E.31, K.35, R.56, E.57, R.68, F.86, R.90, R.112, S.116, S.117, Y.120, Q.121 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:R.112 Hydrogen bonds: A:E.31, A:R.68, A:R.90, A:R.90, A:Q.121, A:Q.121 Salt bridges: A:K.35, A:R.56, A:R.112 pi-Stacking: A:F.86, A:Y.120 TMP.2: 11 residues within 4Å: Chain B: E.31, K.35, R.56, E.57, F.86, R.90, R.112, S.116, S.117, Y.120, Q.121 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:R.112 Hydrogen bonds: B:E.31, B:R.90, B:R.90, B:Q.121, B:Q.121 Water bridges: B:K.35, B:K.35 Salt bridges: B:K.35, B:R.56, B:R.112 pi-Stacking: B:F.86, B:Y.120

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kotaka, M. et al., Structures of S. Aureus Thymidylate Kinase Reveal an Atypical Active Site Configuration and an Intermediate Conformational State Upon Substrate Binding. Protein Sci. (2006)

Release Date

2006-03-08

Peptides

THYMIDYLATE KINASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

THYMIDYLATE KINASE