SMTL ID : 2cev.2 (2 other biounits)

ARGINASE FROM BACILLUS CALDEVELOX, NATIVE STRUCTURE AT PH 8.5

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

homo-trimer

Ligands

6 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 5 residues within 4Å: Chain A: H.99, D.122, D.126, D.226 Ligands: MN.2 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.99, A:D.122, A:D.126, A:D.226, H2O.1 MN.2: 5 residues within 4Å: Chain A: D.122, H.124, D.226, D.228 Ligands: MN.1 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.122, A:H.124, A:D.226, A:D.228, H2O.1 MN.4: 5 residues within 4Å: Chain B: H.99, D.122, D.126, D.226 Ligands: MN.5 6 PLIP interactions: 4 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:H.99, B:D.122, B:D.126, B:D.226, H2O.5, H2O.5 MN.5: 5 residues within 4Å: Chain B: D.122, H.124, D.226, D.228 Ligands: MN.4 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.122, B:H.124, B:D.226, B:D.228, H2O.5 MN.7: 5 residues within 4Å: Chain C: H.99, D.122, D.126, D.226 Ligands: MN.8 6 PLIP interactions: 4 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:H.99, C:D.122, C:D.126, C:D.226, H2O.9, H2O.9 MN.8: 5 residues within 4Å: Chain C: D.122, H.124, D.226, D.228 Ligands: MN.7 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:D.122, C:H.124, C:D.226, C:D.228, H2O.9

3 x GAI: GUANIDINE(Non-covalent)

GAI.3: 8 residues within 4Å: Chain A: R.249, H.252, L.253, E.256, L.298 Chain B: M.195, H.196, D.199 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:R.249 Salt bridges: A:E.256, B:D.199 GAI.6: 8 residues within 4Å: Chain B: R.249, H.252, L.253, E.256, L.298 Chain C: M.195, H.196, D.199 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain B Hydrogen bonds: C:M.195 Salt bridges: C:D.199, B:E.256 GAI.9: 8 residues within 4Å: Chain A: M.195, H.196, D.199 Chain C: R.249, H.252, L.253, E.256, L.298 4 PLIP interactions: 2 interactions with chain C, 2 interactions with chain A Hydrogen bonds: C:R.249, A:M.195 Salt bridges: C:E.256, A:D.199

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bewley, M.C. et al., Crystal structures of Bacillus caldovelox arginase in complex with substrate and inhibitors reveal new insights into activation, inhibition and catalysis in the arginase superfamily. Structure Fold.Des. (1999)

Release Date

1999-04-16

Peptides

PROTEIN (ARGINASE): ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
E

C
F

PROTEIN (ARGINASE)

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