SMTL ID : 2cfm.1

ATP-DEPENDENT DNA LIGASE FROM PYROCOCCUS FURIOSUS

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: G.252, E.299 No protein-ligand interaction detected (PLIP)

1 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.2: 14 residues within 4Å: Chain A: L.226, A.227, E.247, I.248, K.249, Y.250, R.254, R.269, E.299, F.339, M.401, K.403, W.418, K.420 20 PLIP interactions: 20 interactions with chain A Hydrogen bonds: A:A.227, A:E.247, A:E.247, A:Y.250, A:R.254, A:R.269, A:K.403, A:E.426 Water bridges: A:K.249, A:K.249, A:K.249, A:K.249, A:R.254, A:R.254, A:R.414, A:K.534, A:K.534 Salt bridges: A:R.269, A:K.420 pi-Stacking: A:F.339

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nishida, H. et al., The Closed Structure of an Archaeal DNA Ligase from Pyrococcus Furiosus. J.Mol.Biol. (2006)

Release Date

2006-07-12

Peptides

THERMOSTABLE DNA LIGASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

THERMOSTABLE DNA LIGASE