SMTL ID : 2cfv.1

Crystal structure of human protein tyrosine phosphatase receptor type J

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-trimer

Ligands

12 x NI: NICKEL (II) ION(Non-covalent)(Non-functional Binders)

NI.1: 8 residues within 4Å: Chain A: H.5, H.7 Chain B: H.5, H.7 Chain C: H.5, H.7 Ligands: NI.6, NI.11 6 PLIP interactions: 2 interactions with chain C, 2 interactions with chain B, 2 interactions with chain A Metal complexes: C:H.5, C:H.7, B:H.5, B:H.7, A:H.5, A:H.7 NI.2: 5 residues within 4Å: Chain A: K.111, H.282 Chain C: H.4, H.6 Ligands: CL.3 4 PLIP interactions: 2 interactions with chain C, 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: C:H.4, C:H.6, A:H.282, H2O.1 NI.4: 2 residues within 4Å: Ligands: NI.9, NI.14 No protein-ligand interaction detected (PLIP) NI.5: 1 residues within 4Å: Chain A: H.4 No protein-ligand interaction detected (PLIP) NI.6: 8 residues within 4Å: Chain A: H.5, H.7 Chain B: H.5, H.7 Chain C: H.5, H.7 Ligands: NI.1, NI.11 6 PLIP interactions: 2 interactions with chain C, 2 interactions with chain B, 2 interactions with chain A Metal complexes: C:H.5, C:H.7, B:H.5, B:H.7, A:H.5, A:H.7 NI.7: 5 residues within 4Å: Chain A: H.4, H.6 Chain B: K.111, H.282 Ligands: CL.8 4 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: A:H.4, A:H.6, B:H.282, H2O.2 NI.9: 2 residues within 4Å: Ligands: NI.4, NI.14 No protein-ligand interaction detected (PLIP) NI.10: 1 residues within 4Å: Chain B: H.4 No protein-ligand interaction detected (PLIP) NI.11: 8 residues within 4Å: Chain A: H.5, H.7 Chain B: H.5, H.7 Chain C: H.5, H.7 Ligands: NI.1, NI.6 6 PLIP interactions: 2 interactions with chain C, 2 interactions with chain B, 2 interactions with chain A Metal complexes: C:H.5, C:H.7, B:H.5, B:H.7, A:H.5, A:H.7 NI.12: 5 residues within 4Å: Chain B: H.4, H.6 Chain C: K.111, H.282 Ligands: CL.13 4 PLIP interactions: 1 interactions with chain C, 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: C:H.282, B:H.4, B:H.6, H2O.3 NI.14: 2 residues within 4Å: Ligands: NI.4, NI.9 No protein-ligand interaction detected (PLIP) NI.15: 1 residues within 4Å: Chain C: H.4 No protein-ligand interaction detected (PLIP)

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 5 residues within 4Å: Chain A: K.111, H.282 Chain C: H.4, H.6 Ligands: NI.2 Ligand excluded by PLIP CL.8: 5 residues within 4Å: Chain A: H.4, H.6 Chain B: K.111, H.282 Ligands: NI.7 Ligand excluded by PLIP CL.13: 5 residues within 4Å: Chain B: H.4, H.6 Chain C: K.111, H.282 Ligands: NI.12 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Barr, A.J. et al., Large-Scale Structural Analysis of the Classical Human Protein Tyrosine Phosphatome. Cell(Cambridge,Mass.) (2009)

Release Date

2006-03-09

Peptides

HUMAN PROTEIN TYROSINE PHOSPHATASE RECEPTOR TYPE J: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

HUMAN PROTEIN TYROSINE PHOSPHATASE RECEPTOR TYPE J