SMTL ID : 2cfz.1

Crystal structure of SdsA1, an alkylsulfatase from Pseudomonas aeruginosa, in complex with 1-dodecanol

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

homo-dimer

Ligands

2 x 1DO: 1-DODECANOL(Non-covalent)

1DO.1: 8 residues within 4Å: Chain A: H.171, D.173, M.216, A.219, Y.223, T.225, L.243, R.312 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:Y.223, A:T.225, A:L.243 1DO.7: 8 residues within 4Å: Chain B: H.171, D.173, M.216, A.219, Y.223, T.225, L.243, R.312 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:Y.223, B:T.225, B:L.243

6 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 7 residues within 4Å: Chain A: G.463, E.464, Y.465, R.466, W.467 Chain B: L.433, R.441 7 PLIP interactions: 5 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:Y.465, A:R.466, A:W.467, B:R.441, B:R.441 Water bridges: A:G.463, A:Q.499 PEG.3: 1 residues within 4Å: Chain A: E.159 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.159 PEG.4: 5 residues within 4Å: Chain A: H.331, R.332 Chain B: V.589, Q.590, S.591 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:S.591, A:H.331, A:R.335 Water bridges: B:Q.590 PEG.8: 7 residues within 4Å: Chain A: L.433, R.441 Chain B: G.463, E.464, Y.465, R.466, W.467 7 PLIP interactions: 5 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:Y.465, B:R.466, B:W.467, A:R.441, A:R.441 Water bridges: B:G.463, B:Q.499 PEG.9: 1 residues within 4Å: Chain B: E.159 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.159 PEG.10: 5 residues within 4Å: Chain A: V.589, Q.590, S.591 Chain B: H.331, R.332 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:S.591, B:R.335 Water bridges: A:Q.590

4 x ZN: ZINC ION(Non-covalent)

ZN.5: 5 residues within 4Å: Chain A: D.173, H.174, E.299, H.344 Ligands: ZN.6 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.173, A:H.174, A:E.299, A:H.344, H2O.25 ZN.6: 6 residues within 4Å: Chain A: H.169, H.171, H.174, E.280, E.299 Ligands: ZN.5 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.169, A:H.171, A:E.280, A:E.299, H2O.25 ZN.11: 5 residues within 4Å: Chain B: D.173, H.174, E.299, H.344 Ligands: ZN.12 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.173, B:H.174, B:E.299, B:H.344, H2O.49 ZN.12: 6 residues within 4Å: Chain B: H.169, H.171, H.174, E.280, E.299 Ligands: ZN.11 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.169, B:H.171, B:E.280, B:E.299, H2O.49

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hagelueken, G. et al., The Crystal Structure of Sdsa1, an Alkylsulfatase from Pseudomonas Aeruginosa, Defines a Third Class of Sulfatases. Proc.Natl.Acad.Sci.USA (2006)

Release Date

2006-04-26

Peptides

SDS HYDROLASE SDSA1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

SDS HYDROLASE SDSA1

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