SMTL ID : 2cgl.1

Crystal Structure of L-rhamnulose kinase from Escherichia coli in complex with L-fructose, ADP and a modeled ATP gamma phosphate.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.88 Å

Oligo State

monomer

Ligands

1 x LFR: beta-L-fructofuranose(Non-covalent)

LFR.1: 11 residues within 4Å: Chain A: W.82, G.83, V.84, Y.102, H.236, D.237, T.238, W.260, L.262, N.296 Ligands: PO3.3 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:G.83, A:G.83, A:T.238, A:T.238, A:T.238, A:N.296, A:N.296 Water bridges: A:D.237, A:D.237

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.2: 18 residues within 4Å: Chain A: G.12, A.13, S.14, S.15, R.17, S.257, G.258, T.259, L.300, Q.304, L.315, I.319, G.401, G.402, G.403, Q.405, N.406 Ligands: PO3.3 20 PLIP interactions: 20 interactions with chain A Hydrogen bonds: A:A.13, A:S.14, A:S.15, A:T.259, A:T.259, A:Q.304, A:G.402, A:G.403 Water bridges: A:D.10, A:R.17, A:R.37, A:R.37, A:D.237, A:D.237, A:T.259, A:W.260, A:L.300, A:Q.405 Salt bridges: A:R.17, A:R.17

1 x PO3: PHOSPHITE ION(Non-covalent)

PO3.3: 7 residues within 4Å: Chain A: G.12, A.13, D.237, T.259, W.260 Ligands: LFR.1, ADP.2 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:A.13, A:T.259, A:W.260 Water bridges: A:G.258

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Grueninger, D. et al., Structure and Reaction Mechanism of L-Rhamnulose Kinase from Escherichia Coli. J.Mol.Biol. (2006)

Release Date

2006-05-31

Peptides

RHAMNULOKINASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

RHAMNULOKINASE

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