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SMTL ID : 2ch5.1
(1 other biounit)
Crystal structure of human N-acetylglucosamine kinase in complex with N-acetylglucosamine
Coordinates
PDB Format
Method
X-RAY DIFFRACTION 1.90 Å
Oligo State
homo-dimer
Ligands
2 x
NAG
:
2-acetamido-2-deoxy-beta-D-glucopyranose
(Non-covalent)
NAG.1:
15 residues within 4Å:
Chain A:
N.39
,
W.41
,
S.79
,
G.80
,
D.110
,
I.127
,
G.131
,
S.132
,
N.133
,
G.148
,
W.149
,
G.150
,
D.155
Chain B:
Y.208
Ligands:
GOL.2
16
PLIP interactions
:
15 interactions with chain A
,
1 interactions with chain B
Hydrogen bonds:
A:G.15
,
A:N.39
,
A:S.79
,
A:G.80
,
A:D.110
,
A:N.133
,
A:G.148
,
A:G.148
,
A:G.148
,
A:G.150
Water bridges:
A:G.129
,
A:G.131
,
A:H.151
,
A:K.213
Salt bridges:
A:K.213
Hydrophobic interactions:
B:Y.208
NAG.3:
15 residues within 4Å:
Chain A:
Y.208
Chain B:
N.39
,
W.41
,
S.79
,
G.80
,
D.110
,
I.127
,
G.131
,
S.132
,
N.133
,
G.148
,
W.149
,
G.150
,
D.155
Ligands:
GOL.4
18
PLIP interactions
:
17 interactions with chain B
,
1 interactions with chain A
Hydrogen bonds:
B:N.39
,
B:S.79
,
B:G.80
,
B:D.110
,
B:D.110
,
B:N.133
,
B:G.148
,
B:G.148
,
B:G.148
,
B:G.150
Water bridges:
B:G.14
,
B:S.79
,
B:G.131
,
B:G.131
,
B:H.151
,
B:K.213
Salt bridges:
B:K.213
Hydrophobic interactions:
A:Y.208
2 x
GOL
:
GLYCEROL
(Non-functional Binders)
GOL.2:
8 residues within 4Å:
Chain A:
W.41
,
G.80
,
D.82
,
R.135
,
G.148
Chain B:
L.201
,
L.204
Ligands:
NAG.1
6
PLIP interactions
:
6 interactions with chain A
Hydrogen bonds:
A:W.41
,
A:G.80
,
A:R.135
Water bridges:
A:N.133
,
A:N.133
,
A:R.135
GOL.4:
8 residues within 4Å:
Chain A:
L.201
,
L.204
Chain B:
W.41
,
G.80
,
D.82
,
R.135
,
G.148
Ligands:
NAG.3
6
PLIP interactions
:
6 interactions with chain B
Hydrogen bonds:
B:W.41
,
B:G.80
,
B:R.135
Water bridges:
B:N.133
,
B:N.133
,
B:R.135
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Weihofen, W.A. et al., Structures of Human N-Acetylglucosamine Kinase in Two Complexes with N-Acetylglucosamine and with Adp/Glucose: Insights Into Substrate Specificity and Regulation. J.Mol.Biol. (2006)
Release Date
2006-09-18
Peptides
NAGK PROTEIN:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
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Secondary Structure
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2° Structure
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NAGK PROTEIN
Related Entries With Identical Sequence
2ch5.2
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