SMTL ID : 2ch8.1 (1 other biounit)

Structure of the Epstein-Barr Virus Oncogene BARF1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-hexamer

Ligands

6 x NAG- NAG- MAN: alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-MAN.1: 7 residues within 4Å: Chain A: P.53, F.54, F.57, F.58, N.75, S.77, H.78 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:P.53 NAG-NAG-MAN.2: 7 residues within 4Å: Chain B: P.53, F.54, F.57, F.58, N.75, S.77, H.78 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:P.53, B:F.54 Hydrogen bonds: B:P.53 NAG-NAG-MAN.9: 7 residues within 4Å: Chain C: P.53, F.54, F.57, F.58, N.75, S.77, H.78 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:P.53 NAG-NAG-MAN.10: 7 residues within 4Å: Chain D: P.53, F.54, F.57, F.58, N.75, S.77, H.78 3 PLIP interactions: 3 interactions with chain D Hydrophobic interactions: D:P.53, D:F.54 Hydrogen bonds: D:P.53 NAG-NAG-MAN.17: 7 residues within 4Å: Chain E: P.53, F.54, F.57, F.58, N.75, S.77, H.78 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:P.53 NAG-NAG-MAN.18: 7 residues within 4Å: Chain F: P.53, F.54, F.57, F.58, N.75, S.77, H.78 3 PLIP interactions: 3 interactions with chain F Hydrophobic interactions: F:P.53, F:F.54 Hydrogen bonds: F:P.53

18 x PT: PLATINUM (II) ION(Non-covalent)

PT.3: 2 residues within 4Å: Chain A: M.156, E.158 Ligand excluded by PLIP PT.4: 2 residues within 4Å: Chain A: M.140, H.176 Ligand excluded by PLIP PT.5: 1 residues within 4Å: Chain A: R.62 Ligand excluded by PLIP PT.6: 2 residues within 4Å: Chain B: M.156, E.158 Ligand excluded by PLIP PT.7: 2 residues within 4Å: Chain B: M.140, H.176 Ligand excluded by PLIP PT.8: 3 residues within 4Å: Chain B: V.1, H.98, S.100 Ligand excluded by PLIP PT.11: 2 residues within 4Å: Chain C: M.156, E.158 Ligand excluded by PLIP PT.12: 2 residues within 4Å: Chain C: M.140, H.176 Ligand excluded by PLIP PT.13: 1 residues within 4Å: Chain C: R.62 Ligand excluded by PLIP PT.14: 2 residues within 4Å: Chain D: M.156, E.158 Ligand excluded by PLIP PT.15: 2 residues within 4Å: Chain D: M.140, H.176 Ligand excluded by PLIP PT.16: 3 residues within 4Å: Chain D: V.1, H.98, S.100 Ligand excluded by PLIP PT.19: 2 residues within 4Å: Chain E: M.156, E.158 Ligand excluded by PLIP PT.20: 2 residues within 4Å: Chain E: M.140, H.176 Ligand excluded by PLIP PT.21: 1 residues within 4Å: Chain E: R.62 Ligand excluded by PLIP PT.22: 2 residues within 4Å: Chain F: M.156, E.158 Ligand excluded by PLIP PT.23: 2 residues within 4Å: Chain F: M.140, H.176 Ligand excluded by PLIP PT.24: 3 residues within 4Å: Chain F: V.1, H.98, S.100 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tarbouriech, N. et al., Structure of the Epstein-Barr Virus Oncogene Barf1. J.Mol.Biol. (2006)

Release Date

2006-05-31

Peptides

33 KDA EARLY PROTEIN: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

C
A

D
D

E
A

F
D

33 KDA EARLY PROTEIN

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