SMTL ID : 2chi.1

Recombinant human H ferritin, K86Q and E27D mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-24-mer

Ligands

72 x CA: CALCIUM ION(Non-covalent)

CA.1: 2 residues within 4Å: Chain A: Q.87 Chain D: D.85 4 PLIP interactions: 2 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:D.85, D:D.85, H2O.7, H2O.44 CA.2: 8 residues within 4Å: Chain A: D.132, E.135 Chain B: D.132, E.135 Chain C: D.132, E.135 Ligands: CA.8, CA.14 3 PLIP interactions: 1 interactions with chain B, 1 interactions with chain C, 1 interactions with chain A Metal complexes: B:E.135, C:E.135, A:E.135 CA.5: 3 residues within 4Å: Chain A: Q.59, E.63, E.108 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.63, A:E.108, H2O.6, H2O.11 CA.7: 2 residues within 4Å: Chain B: Q.87 Chain F: D.85 4 PLIP interactions: 2 interactions with chain F, 2 Ligand-Water interactions Metal complexes: F:D.85, F:D.85, H2O.19, H2O.68 CA.8: 8 residues within 4Å: Chain A: D.132, E.135 Chain B: D.132, E.135 Chain C: D.132, E.135 Ligands: CA.2, CA.14 3 PLIP interactions: 1 interactions with chain B, 1 interactions with chain C, 1 interactions with chain A Metal complexes: B:E.135, C:E.135, A:E.135 CA.11: 3 residues within 4Å: Chain B: Q.59, E.63, E.108 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.63, B:E.108, H2O.18, H2O.23 CA.13: 2 residues within 4Å: Chain C: Q.87 Chain J: D.85 4 PLIP interactions: 2 interactions with chain J, 2 Ligand-Water interactions Metal complexes: J:D.85, J:D.85, H2O.32, H2O.116 CA.14: 8 residues within 4Å: Chain A: D.132, E.135 Chain B: D.132, E.135 Chain C: D.132, E.135 Ligands: CA.2, CA.8 3 PLIP interactions: 1 interactions with chain B, 1 interactions with chain C, 1 interactions with chain A Metal complexes: B:E.135, C:E.135, A:E.135 CA.17: 3 residues within 4Å: Chain C: Q.59, E.63, E.108 4 PLIP interactions: 2 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:E.63, C:E.108, H2O.30, H2O.35 CA.19: 2 residues within 4Å: Chain A: D.85 Chain D: Q.87 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.85, A:D.85, H2O.7, H2O.44 CA.20: 8 residues within 4Å: Chain D: D.132, E.135 Chain E: D.132, E.135 Chain G: D.132, E.135 Ligands: CA.26, CA.38 3 PLIP interactions: 1 interactions with chain G, 1 interactions with chain E, 1 interactions with chain D Metal complexes: G:E.135, E:E.135, D:E.135 CA.23: 3 residues within 4Å: Chain D: Q.59, E.63, E.108 4 PLIP interactions: 2 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:E.63, D:E.108, H2O.42, H2O.47 CA.25: 2 residues within 4Å: Chain E: Q.87 Chain K: D.85 4 PLIP interactions: 2 interactions with chain K, 2 Ligand-Water interactions Metal complexes: K:D.85, K:D.85, H2O.56, H2O.128 CA.26: 8 residues within 4Å: Chain D: D.132, E.135 Chain E: D.132, E.135 Chain G: D.132, E.135 Ligands: CA.20, CA.38 3 PLIP interactions: 1 interactions with chain G, 1 interactions with chain E, 1 interactions with chain D Metal complexes: G:E.135, E:E.135, D:E.135 CA.29: 3 residues within 4Å: Chain E: Q.59, E.63, E.108 4 PLIP interactions: 2 interactions with chain E, 2 Ligand-Water interactions Metal complexes: E:E.63, E:E.108, H2O.54, H2O.59 CA.31: 2 residues within 4Å: Chain B: D.85 Chain F: Q.87 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.85, B:D.85, H2O.19, H2O.68 CA.32: 8 residues within 4Å: Chain F: D.132, E.135 Chain H: D.132, E.135 Chain I: D.132, E.135 Ligands: CA.44, CA.50 3 PLIP interactions: 1 interactions with chain H, 1 interactions with chain I, 1 interactions with chain F Metal complexes: H:E.135, I:E.135, F:E.135 CA.35: 3 residues within 4Å: Chain F: Q.59, E.63, E.108 4 PLIP interactions: 2 interactions with chain F, 2 Ligand-Water interactions Metal complexes: F:E.63, F:E.108, H2O.66, H2O.71 CA.37: 2 residues within 4Å: Chain G: Q.87 Chain N: D.85 4 PLIP interactions: 2 interactions with chain N, 2 Ligand-Water interactions Metal complexes: N:D.85, N:D.85, H2O.80, H2O.164 CA.38: 8 residues within 4Å: Chain D: D.132, E.135 Chain E: D.132, E.135 Chain G: D.132, E.135 Ligands: CA.20, CA.26 3 PLIP interactions: 1 interactions with chain D, 1 interactions with chain E, 1 interactions with chain G Metal complexes: D:E.135, E:E.135, G:E.135 CA.41: 3 residues within 4Å: Chain G: Q.59, E.63, E.108 4 PLIP interactions: 2 interactions with chain G, 2 Ligand-Water interactions Metal complexes: G:E.63, G:E.108, H2O.78, H2O.83 CA.43: 2 residues within 4Å: Chain H: Q.87 Chain M: D.85 4 PLIP interactions: 2 interactions with chain M, 2 Ligand-Water interactions Metal complexes: M:D.85, M:D.85, H2O.92, H2O.152 CA.44: 8 residues within 4Å: Chain F: D.132, E.135 Chain H: D.132, E.135 Chain I: D.132, E.135 Ligands: CA.32, CA.50 3 PLIP interactions: 1 interactions with chain F, 1 interactions with chain I, 1 interactions with chain H Metal complexes: F:E.135, I:E.135, H:E.135 CA.47: 3 residues within 4Å: Chain H: Q.59, E.63, E.108 4 PLIP interactions: 2 interactions with chain H, 2 Ligand-Water interactions Metal complexes: H:E.63, H:E.108, H2O.90, H2O.95 CA.49: 2 residues within 4Å: Chain I: Q.87 Chain S: D.85 4 PLIP interactions: 2 interactions with chain S, 2 Ligand-Water interactions Metal complexes: S:D.85, S:D.85, H2O.104, H2O.225 CA.50: 8 residues within 4Å: Chain F: D.132, E.135 Chain H: D.132, E.135 Chain I: D.132, E.135 Ligands: CA.32, CA.44 3 PLIP interactions: 1 interactions with chain F, 1 interactions with chain I, 1 interactions with chain H Metal complexes: F:E.135, I:E.135, H:E.135 CA.53: 3 residues within 4Å: Chain I: Q.59, E.63, E.108 4 PLIP interactions: 2 interactions with chain I, 2 Ligand-Water interactions Metal complexes: I:E.63, I:E.108, H2O.103, H2O.107 CA.55: 2 residues within 4Å: Chain C: D.85 Chain J: Q.87 4 PLIP interactions: 2 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:D.85, C:D.85, H2O.31, H2O.116 CA.56: 8 residues within 4Å: Chain J: D.132, E.135 Chain L: D.132, E.135 Chain O: D.132, E.135 Ligands: CA.68, CA.86 3 PLIP interactions: 1 interactions with chain J, 1 interactions with chain O, 1 interactions with chain L Metal complexes: J:E.135, O:E.135, L:E.135 CA.59: 3 residues within 4Å: Chain J: Q.59, E.63, E.108 4 PLIP interactions: 2 interactions with chain J, 2 Ligand-Water interactions Metal complexes: J:E.63, J:E.108, H2O.115, H2O.119 CA.61: 2 residues within 4Å: Chain E: D.85 Chain K: Q.87 4 PLIP interactions: 2 interactions with chain E, 2 Ligand-Water interactions Metal complexes: E:D.85, E:D.85, H2O.56, H2O.128 CA.62: 8 residues within 4Å: Chain K: D.132, E.135 Chain M: D.132, E.135 Chain P: D.132, E.135 Ligands: CA.74, CA.92 3 PLIP interactions: 1 interactions with chain M, 1 interactions with chain K, 1 interactions with chain P Metal complexes: M:E.135, K:E.135, P:E.135 CA.65: 3 residues within 4Å: Chain K: Q.59, E.63, E.108 4 PLIP interactions: 2 interactions with chain K, 2 Ligand-Water interactions Metal complexes: K:E.63, K:E.108, H2O.127, H2O.131 CA.67: 2 residues within 4Å: Chain L: Q.87 Chain Q: D.85 4 PLIP interactions: 2 interactions with chain Q, 2 Ligand-Water interactions Metal complexes: Q:D.85, Q:D.85, H2O.140, H2O.201 CA.68: 8 residues within 4Å: Chain J: D.132, E.135 Chain L: D.132, E.135 Chain O: D.132, E.135 Ligands: CA.56, CA.86 3 PLIP interactions: 1 interactions with chain J, 1 interactions with chain O, 1 interactions with chain L Metal complexes: J:E.135, O:E.135, L:E.135 CA.71: 3 residues within 4Å: Chain L: Q.59, E.63, E.108 4 PLIP interactions: 2 interactions with chain L, 2 Ligand-Water interactions Metal complexes: L:E.63, L:E.108, H2O.139, H2O.143 CA.73: 2 residues within 4Å: Chain H: D.85 Chain M: Q.87 4 PLIP interactions: 2 interactions with chain H, 2 Ligand-Water interactions Metal complexes: H:D.85, H:D.85, H2O.92, H2O.152 CA.74: 8 residues within 4Å: Chain K: D.132, E.135 Chain M: D.132, E.135 Chain P: D.132, E.135 Ligands: CA.62, CA.92 3 PLIP interactions: 1 interactions with chain K, 1 interactions with chain M, 1 interactions with chain P Metal complexes: K:E.135, M:E.135, P:E.135 CA.77: 3 residues within 4Å: Chain M: Q.59, E.63, E.108 4 PLIP interactions: 2 interactions with chain M, 2 Ligand-Water interactions Metal complexes: M:E.63, M:E.108, H2O.151, H2O.155 CA.79: 2 residues within 4Å: Chain G: D.85 Chain N: Q.87 4 PLIP interactions: 2 interactions with chain G, 2 Ligand-Water interactions Metal complexes: G:D.85, G:D.85, H2O.80, H2O.164 CA.80: 8 residues within 4Å: Chain N: D.132, E.135 Chain Q: D.132, E.135 Chain R: D.132, E.135 Ligands: CA.98, CA.104 3 PLIP interactions: 1 interactions with chain Q, 1 interactions with chain R, 1 interactions with chain N Metal complexes: Q:E.135, R:E.135, N:E.135 CA.83: 3 residues within 4Å: Chain N: Q.59, E.63, E.108 4 PLIP interactions: 2 interactions with chain N, 2 Ligand-Water interactions Metal complexes: N:E.63, N:E.108, H2O.163, H2O.168 CA.85: 2 residues within 4Å: Chain O: Q.87 Chain T: D.85 4 PLIP interactions: 2 interactions with chain T, 2 Ligand-Water interactions Metal complexes: T:D.85, T:D.85, H2O.176, H2O.237 CA.86: 8 residues within 4Å: Chain J: D.132, E.135 Chain L: D.132, E.135 Chain O: D.132, E.135 Ligands: CA.56, CA.68 3 PLIP interactions: 1 interactions with chain J, 1 interactions with chain L, 1 interactions with chain O Metal complexes: J:E.135, L:E.135, O:E.135 CA.89: 3 residues within 4Å: Chain O: Q.59, E.63, E.108 4 PLIP interactions: 2 interactions with chain O, 2 Ligand-Water interactions Metal complexes: O:E.63, O:E.108, H2O.175, H2O.180 CA.91: 2 residues within 4Å: Chain P: Q.87 Chain U: D.85 4 PLIP interactions: 2 interactions with chain U, 2 Ligand-Water interactions Metal complexes: U:D.85, U:D.85, H2O.189, H2O.249 CA.92: 8 residues within 4Å: Chain K: D.132, E.135 Chain M: D.132, E.135 Chain P: D.132, E.135 Ligands: CA.62, CA.74 3 PLIP interactions: 1 interactions with chain K, 1 interactions with chain M, 1 interactions with chain P Metal complexes: K:E.135, M:E.135, P:E.135 CA.95: 3 residues within 4Å: Chain P: Q.59, E.63, E.108 4 PLIP interactions: 2 interactions with chain P, 2 Ligand-Water interactions Metal complexes: P:E.63, P:E.108, H2O.187, H2O.192 CA.97: 2 residues within 4Å: Chain L: D.85 Chain Q: Q.87 4 PLIP interactions: 2 interactions with chain L, 2 Ligand-Water interactions Metal complexes: L:D.85, L:D.85, H2O.140, H2O.201 CA.98: 8 residues within 4Å: Chain N: D.132, E.135 Chain Q: D.132, E.135 Chain R: D.132, E.135 Ligands: CA.80, CA.104 3 PLIP interactions: 1 interactions with chain N, 1 interactions with chain Q, 1 interactions with chain R Metal complexes: N:E.135, Q:E.135, R:E.135 CA.101: 3 residues within 4Å: Chain Q: Q.59, E.63, E.108 4 PLIP interactions: 2 interactions with chain Q, 2 Ligand-Water interactions Metal complexes: Q:E.63, Q:E.108, H2O.199, H2O.204 CA.103: 2 residues within 4Å: Chain R: Q.87 Chain W: D.85 4 PLIP interactions: 2 interactions with chain W, 2 Ligand-Water interactions Metal complexes: W:D.85, W:D.85, H2O.213, H2O.273 CA.104: 8 residues within 4Å: Chain N: D.132, E.135 Chain Q: D.132, E.135 Chain R: D.132, E.135 Ligands: CA.80, CA.98 3 PLIP interactions: 1 interactions with chain N, 1 interactions with chain Q, 1 interactions with chain R Metal complexes: N:E.135, Q:E.135, R:E.135 CA.107: 3 residues within 4Å: Chain R: Q.59, E.63, E.108 4 PLIP interactions: 2 interactions with chain R, 2 Ligand-Water interactions Metal complexes: R:E.63, R:E.108, H2O.211, H2O.216 CA.109: 2 residues within 4Å: Chain I: D.85 Chain S: Q.87 4 PLIP interactions: 2 interactions with chain I, 2 Ligand-Water interactions Metal complexes: I:D.85, I:D.85, H2O.104, H2O.225 CA.110: 8 residues within 4Å: Chain S: D.132, E.135 Chain T: D.132, E.135 Chain V: D.132, E.135 Ligands: CA.116, CA.128 3 PLIP interactions: 1 interactions with chain T, 1 interactions with chain S, 1 interactions with chain V Metal complexes: T:E.135, S:E.135, V:E.135 CA.113: 3 residues within 4Å: Chain S: Q.59, E.63, E.108 4 PLIP interactions: 2 interactions with chain S, 2 Ligand-Water interactions Metal complexes: S:E.63, S:E.108, H2O.223, H2O.228 CA.115: 2 residues within 4Å: Chain O: D.85 Chain T: Q.87 4 PLIP interactions: 2 interactions with chain O, 2 Ligand-Water interactions Metal complexes: O:D.85, O:D.85, H2O.176, H2O.237 CA.116: 8 residues within 4Å: Chain S: D.132, E.135 Chain T: D.132, E.135 Chain V: D.132, E.135 Ligands: CA.110, CA.128 3 PLIP interactions: 1 interactions with chain T, 1 interactions with chain S, 1 interactions with chain V Metal complexes: T:E.135, S:E.135, V:E.135 CA.119: 3 residues within 4Å: Chain T: Q.59, E.63, E.108 4 PLIP interactions: 2 interactions with chain T, 2 Ligand-Water interactions Metal complexes: T:E.63, T:E.108, H2O.235, H2O.240 CA.121: 2 residues within 4Å: Chain P: D.85 Chain U: Q.87 4 PLIP interactions: 2 interactions with chain P, 2 Ligand-Water interactions Metal complexes: P:D.85, P:D.85, H2O.188, H2O.249 CA.122: 8 residues within 4Å: Chain U: D.132, E.135 Chain W: D.132, E.135 Chain X: D.132, E.135 Ligands: CA.134, CA.140 3 PLIP interactions: 1 interactions with chain W, 1 interactions with chain U, 1 interactions with chain X Metal complexes: W:E.135, U:E.135, X:E.135 CA.125: 3 residues within 4Å: Chain U: Q.59, E.63, E.108 4 PLIP interactions: 2 interactions with chain U, 2 Ligand-Water interactions Metal complexes: U:E.63, U:E.108, H2O.247, H2O.252 CA.127: 2 residues within 4Å: Chain V: Q.87 Chain X: D.85 4 PLIP interactions: 2 interactions with chain X, 2 Ligand-Water interactions Metal complexes: X:D.85, X:D.85, H2O.261, H2O.285 CA.128: 8 residues within 4Å: Chain S: D.132, E.135 Chain T: D.132, E.135 Chain V: D.132, E.135 Ligands: CA.110, CA.116 3 PLIP interactions: 1 interactions with chain T, 1 interactions with chain S, 1 interactions with chain V Metal complexes: T:E.135, S:E.135, V:E.135 CA.131: 3 residues within 4Å: Chain V: Q.59, E.63, E.108 4 PLIP interactions: 2 interactions with chain V, 2 Ligand-Water interactions Metal complexes: V:E.63, V:E.108, H2O.260, H2O.264 CA.133: 2 residues within 4Å: Chain R: D.85 Chain W: Q.87 4 PLIP interactions: 2 interactions with chain R, 2 Ligand-Water interactions Metal complexes: R:D.85, R:D.85, H2O.213, H2O.273 CA.134: 8 residues within 4Å: Chain U: D.132, E.135 Chain W: D.132, E.135 Chain X: D.132, E.135 Ligands: CA.122, CA.140 3 PLIP interactions: 1 interactions with chain X, 1 interactions with chain W, 1 interactions with chain U Metal complexes: X:E.135, W:E.135, U:E.135 CA.137: 3 residues within 4Å: Chain W: Q.59, E.63, E.108 4 PLIP interactions: 2 interactions with chain W, 2 Ligand-Water interactions Metal complexes: W:E.63, W:E.108, H2O.272, H2O.276 CA.139: 2 residues within 4Å: Chain V: D.85 Chain X: Q.87 4 PLIP interactions: 2 interactions with chain V, 2 Ligand-Water interactions Metal complexes: V:D.85, V:D.85, H2O.261, H2O.285 CA.140: 8 residues within 4Å: Chain U: D.132, E.135 Chain W: D.132, E.135 Chain X: D.132, E.135 Ligands: CA.122, CA.134 3 PLIP interactions: 1 interactions with chain X, 1 interactions with chain W, 1 interactions with chain U Metal complexes: X:E.135, W:E.135, U:E.135 CA.143: 3 residues within 4Å: Chain X: Q.59, E.63, E.108 4 PLIP interactions: 2 interactions with chain X, 2 Ligand-Water interactions Metal complexes: X:E.63, X:E.108, H2O.284, H2O.288

48 x ZN: ZINC ION(Non-covalent)

ZN.3: 3 residues within 4Å: Chain A: D.28, E.63, H.66 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.28, A:E.63, A:H.66, H2O.12, H2O.12 ZN.4: 7 residues within 4Å: Chain A: H.174 Chain E: H.174 Chain F: H.174 Chain M: H.174 Ligands: ZN.28, ZN.34, ZN.76 5 PLIP interactions: 1 interactions with chain F, 1 interactions with chain M, 1 interactions with chain E, 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: F:H.174, M:H.174, E:H.174, A:H.174, H2O.13 ZN.9: 3 residues within 4Å: Chain B: D.28, E.63, H.66 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.28, B:E.63, B:H.66, H2O.25, H2O.25 ZN.10: 7 residues within 4Å: Chain B: H.174 Chain I: H.174 Chain J: H.174 Chain T: H.174 Ligands: ZN.52, ZN.58, ZN.118 5 PLIP interactions: 1 interactions with chain B, 1 interactions with chain T, 1 interactions with chain J, 1 interactions with chain I, 1 Ligand-Water interactions Metal complexes: B:H.174, T:H.174, J:H.174, I:H.174, H2O.25 ZN.15: 3 residues within 4Å: Chain C: D.28, E.63, H.66 5 PLIP interactions: 3 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:D.28, C:E.63, C:H.66, H2O.37, H2O.37 ZN.16: 7 residues within 4Å: Chain C: H.174 Chain D: H.174 Chain L: H.174 Chain N: H.174 Ligands: ZN.22, ZN.70, ZN.82 5 PLIP interactions: 1 interactions with chain D, 1 interactions with chain C, 1 interactions with chain L, 1 interactions with chain N, 1 Ligand-Water interactions Metal complexes: D:H.174, C:H.174, L:H.174, N:H.174, H2O.37 ZN.21: 3 residues within 4Å: Chain D: D.28, E.63, H.66 5 PLIP interactions: 3 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:D.28, D:E.63, D:H.66, H2O.49, H2O.49 ZN.22: 7 residues within 4Å: Chain C: H.174 Chain D: H.174 Chain L: H.174 Chain N: H.174 Ligands: ZN.16, ZN.70, ZN.82 5 PLIP interactions: 1 interactions with chain C, 1 interactions with chain L, 1 interactions with chain N, 1 interactions with chain D, 1 Ligand-Water interactions Metal complexes: C:H.174, L:H.174, N:H.174, D:H.174, H2O.37 ZN.27: 3 residues within 4Å: Chain E: D.28, E.63, H.66 5 PLIP interactions: 3 interactions with chain E, 2 Ligand-Water interactions Metal complexes: E:D.28, E:E.63, E:H.66, H2O.61, H2O.61 ZN.28: 7 residues within 4Å: Chain A: H.174 Chain E: H.174 Chain F: H.174 Chain M: H.174 Ligands: ZN.4, ZN.34, ZN.76 5 PLIP interactions: 1 interactions with chain F, 1 interactions with chain A, 1 interactions with chain M, 1 interactions with chain E, 1 Ligand-Water interactions Metal complexes: F:H.174, A:H.174, M:H.174, E:H.174, H2O.13 ZN.33: 3 residues within 4Å: Chain F: D.28, E.63, H.66 5 PLIP interactions: 3 interactions with chain F, 2 Ligand-Water interactions Metal complexes: F:D.28, F:E.63, F:H.66, H2O.73, H2O.73 ZN.34: 7 residues within 4Å: Chain A: H.174 Chain E: H.174 Chain F: H.174 Chain M: H.174 Ligands: ZN.4, ZN.28, ZN.76 5 PLIP interactions: 1 interactions with chain F, 1 interactions with chain A, 1 interactions with chain M, 1 interactions with chain E, 1 Ligand-Water interactions Metal complexes: F:H.174, A:H.174, M:H.174, E:H.174, H2O.13 ZN.39: 3 residues within 4Å: Chain G: D.28, E.63, H.66 5 PLIP interactions: 3 interactions with chain G, 2 Ligand-Water interactions Metal complexes: G:D.28, G:E.63, G:H.66, H2O.85, H2O.85 ZN.40: 7 residues within 4Å: Chain G: H.174 Chain K: H.174 Chain R: H.174 Chain U: H.174 Ligands: ZN.64, ZN.106, ZN.124 5 PLIP interactions: 1 interactions with chain K, 1 interactions with chain U, 1 interactions with chain R, 1 interactions with chain G, 1 Ligand-Water interactions Metal complexes: K:H.174, U:H.174, R:H.174, G:H.174, H2O.85 ZN.45: 3 residues within 4Å: Chain H: D.28, E.63, H.66 5 PLIP interactions: 3 interactions with chain H, 2 Ligand-Water interactions Metal complexes: H:D.28, H:E.63, H:H.66, H2O.97, H2O.97 ZN.46: 7 residues within 4Å: Chain H: H.174 Chain P: H.174 Chain S: H.174 Chain X: H.174 Ligands: ZN.94, ZN.112, ZN.142 5 PLIP interactions: 1 interactions with chain H, 1 interactions with chain X, 1 interactions with chain S, 1 interactions with chain P, 1 Ligand-Water interactions Metal complexes: H:H.174, X:H.174, S:H.174, P:H.174, H2O.97 ZN.51: 3 residues within 4Å: Chain I: D.28, E.63, H.66 5 PLIP interactions: 3 interactions with chain I, 2 Ligand-Water interactions Metal complexes: I:D.28, I:E.63, I:H.66, H2O.109, H2O.109 ZN.52: 7 residues within 4Å: Chain B: H.174 Chain I: H.174 Chain J: H.174 Chain T: H.174 Ligands: ZN.10, ZN.58, ZN.118 5 PLIP interactions: 1 interactions with chain I, 1 interactions with chain B, 1 interactions with chain T, 1 interactions with chain J, 1 Ligand-Water interactions Metal complexes: I:H.174, B:H.174, T:H.174, J:H.174, H2O.25 ZN.57: 3 residues within 4Å: Chain J: D.28, E.63, H.66 5 PLIP interactions: 3 interactions with chain J, 2 Ligand-Water interactions Metal complexes: J:D.28, J:E.63, J:H.66, H2O.121, H2O.121 ZN.58: 7 residues within 4Å: Chain B: H.174 Chain I: H.174 Chain J: H.174 Chain T: H.174 Ligands: ZN.10, ZN.52, ZN.118 5 PLIP interactions: 1 interactions with chain I, 1 interactions with chain T, 1 interactions with chain J, 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: I:H.174, T:H.174, J:H.174, B:H.174, H2O.25 ZN.63: 3 residues within 4Å: Chain K: D.28, E.63, H.66 5 PLIP interactions: 3 interactions with chain K, 2 Ligand-Water interactions Metal complexes: K:D.28, K:E.63, K:H.66, H2O.133, H2O.133 ZN.64: 7 residues within 4Å: Chain G: H.174 Chain K: H.174 Chain R: H.174 Chain U: H.174 Ligands: ZN.40, ZN.106, ZN.124 5 PLIP interactions: 1 interactions with chain U, 1 interactions with chain G, 1 interactions with chain R, 1 interactions with chain K, 1 Ligand-Water interactions Metal complexes: U:H.174, G:H.174, R:H.174, K:H.174, H2O.85 ZN.69: 3 residues within 4Å: Chain L: D.28, E.63, H.66 5 PLIP interactions: 3 interactions with chain L, 2 Ligand-Water interactions Metal complexes: L:D.28, L:E.63, L:H.66, H2O.145, H2O.145 ZN.70: 7 residues within 4Å: Chain C: H.174 Chain D: H.174 Chain L: H.174 Chain N: H.174 Ligands: ZN.16, ZN.22, ZN.82 5 PLIP interactions: 1 interactions with chain C, 1 interactions with chain N, 1 interactions with chain L, 1 interactions with chain D, 1 Ligand-Water interactions Metal complexes: C:H.174, N:H.174, L:H.174, D:H.174, H2O.37 ZN.75: 3 residues within 4Å: Chain M: D.28, E.63, H.66 5 PLIP interactions: 3 interactions with chain M, 2 Ligand-Water interactions Metal complexes: M:D.28, M:E.63, M:H.66, H2O.157, H2O.157 ZN.76: 7 residues within 4Å: Chain A: H.174 Chain E: H.174 Chain F: H.174 Chain M: H.174 Ligands: ZN.4, ZN.28, ZN.34 5 PLIP interactions: 1 interactions with chain A, 1 interactions with chain E, 1 interactions with chain M, 1 interactions with chain F, 1 Ligand-Water interactions Metal complexes: A:H.174, E:H.174, M:H.174, F:H.174, H2O.13 ZN.81: 3 residues within 4Å: Chain N: D.28, E.63, H.66 5 PLIP interactions: 3 interactions with chain N, 2 Ligand-Water interactions Metal complexes: N:D.28, N:E.63, N:H.66, H2O.169, H2O.169 ZN.82: 7 residues within 4Å: Chain C: H.174 Chain D: H.174 Chain L: H.174 Chain N: H.174 Ligands: ZN.16, ZN.22, ZN.70 5 PLIP interactions: 1 interactions with chain L, 1 interactions with chain N, 1 interactions with chain C, 1 interactions with chain D, 1 Ligand-Water interactions Metal complexes: L:H.174, N:H.174, C:H.174, D:H.174, H2O.37 ZN.87: 3 residues within 4Å: Chain O: D.28, E.63, H.66 5 PLIP interactions: 3 interactions with chain O, 2 Ligand-Water interactions Metal complexes: O:D.28, O:E.63, O:H.66, H2O.182, H2O.182 ZN.88: 7 residues within 4Å: Chain O: H.174 Chain Q: H.174 Chain V: H.174 Chain W: H.174 Ligands: ZN.100, ZN.130, ZN.136 5 PLIP interactions: 1 interactions with chain O, 1 interactions with chain V, 1 interactions with chain Q, 1 interactions with chain W, 1 Ligand-Water interactions Metal complexes: O:H.174, V:H.174, Q:H.174, W:H.174, H2O.182 ZN.93: 3 residues within 4Å: Chain P: D.28, E.63, H.66 5 PLIP interactions: 3 interactions with chain P, 2 Ligand-Water interactions Metal complexes: P:D.28, P:E.63, P:H.66, H2O.194, H2O.194 ZN.94: 7 residues within 4Å: Chain H: H.174 Chain P: H.174 Chain S: H.174 Chain X: H.174 Ligands: ZN.46, ZN.112, ZN.142 5 PLIP interactions: 1 interactions with chain P, 1 interactions with chain X, 1 interactions with chain H, 1 interactions with chain S, 1 Ligand-Water interactions Metal complexes: P:H.174, X:H.174, H:H.174, S:H.174, H2O.97 ZN.99: 3 residues within 4Å: Chain Q: D.28, E.63, H.66 5 PLIP interactions: 3 interactions with chain Q, 2 Ligand-Water interactions Metal complexes: Q:D.28, Q:E.63, Q:H.66, H2O.206, H2O.206 ZN.100: 7 residues within 4Å: Chain O: H.174 Chain Q: H.174 Chain V: H.174 Chain W: H.174 Ligands: ZN.88, ZN.130, ZN.136 5 PLIP interactions: 1 interactions with chain W, 1 interactions with chain Q, 1 interactions with chain O, 1 interactions with chain V, 1 Ligand-Water interactions Metal complexes: W:H.174, Q:H.174, O:H.174, V:H.174, H2O.182 ZN.105: 3 residues within 4Å: Chain R: D.28, E.63, H.66 5 PLIP interactions: 3 interactions with chain R, 2 Ligand-Water interactions Metal complexes: R:D.28, R:E.63, R:H.66, H2O.218, H2O.218 ZN.106: 7 residues within 4Å: Chain G: H.174 Chain K: H.174 Chain R: H.174 Chain U: H.174 Ligands: ZN.40, ZN.64, ZN.124 5 PLIP interactions: 1 interactions with chain K, 1 interactions with chain R, 1 interactions with chain G, 1 interactions with chain U, 1 Ligand-Water interactions Metal complexes: K:H.174, R:H.174, G:H.174, U:H.174, H2O.85 ZN.111: 3 residues within 4Å: Chain S: D.28, E.63, H.66 5 PLIP interactions: 3 interactions with chain S, 2 Ligand-Water interactions Metal complexes: S:D.28, S:E.63, S:H.66, H2O.230, H2O.230 ZN.112: 7 residues within 4Å: Chain H: H.174 Chain P: H.174 Chain S: H.174 Chain X: H.174 Ligands: ZN.46, ZN.94, ZN.142 5 PLIP interactions: 1 interactions with chain H, 1 interactions with chain P, 1 interactions with chain X, 1 interactions with chain S, 1 Ligand-Water interactions Metal complexes: H:H.174, P:H.174, X:H.174, S:H.174, H2O.97 ZN.117: 3 residues within 4Å: Chain T: D.28, E.63, H.66 5 PLIP interactions: 3 interactions with chain T, 2 Ligand-Water interactions Metal complexes: T:D.28, T:E.63, T:H.66, H2O.242, H2O.242 ZN.118: 7 residues within 4Å: Chain B: H.174 Chain I: H.174 Chain J: H.174 Chain T: H.174 Ligands: ZN.10, ZN.52, ZN.58 5 PLIP interactions: 1 interactions with chain J, 1 interactions with chain I, 1 interactions with chain T, 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: J:H.174, I:H.174, T:H.174, B:H.174, H2O.25 ZN.123: 3 residues within 4Å: Chain U: D.28, E.63, H.66 5 PLIP interactions: 3 interactions with chain U, 2 Ligand-Water interactions Metal complexes: U:D.28, U:E.63, U:H.66, H2O.254, H2O.254 ZN.124: 7 residues within 4Å: Chain G: H.174 Chain K: H.174 Chain R: H.174 Chain U: H.174 Ligands: ZN.40, ZN.64, ZN.106 5 PLIP interactions: 1 interactions with chain K, 1 interactions with chain G, 1 interactions with chain R, 1 interactions with chain U, 1 Ligand-Water interactions Metal complexes: K:H.174, G:H.174, R:H.174, U:H.174, H2O.85 ZN.129: 3 residues within 4Å: Chain V: D.28, E.63, H.66 5 PLIP interactions: 3 interactions with chain V, 2 Ligand-Water interactions Metal complexes: V:D.28, V:E.63, V:H.66, H2O.266, H2O.266 ZN.130: 7 residues within 4Å: Chain O: H.174 Chain Q: H.174 Chain V: H.174 Chain W: H.174 Ligands: ZN.88, ZN.100, ZN.136 5 PLIP interactions: 1 interactions with chain O, 1 interactions with chain Q, 1 interactions with chain W, 1 interactions with chain V, 1 Ligand-Water interactions Metal complexes: O:H.174, Q:H.174, W:H.174, V:H.174, H2O.182 ZN.135: 3 residues within 4Å: Chain W: D.28, E.63, H.66 5 PLIP interactions: 3 interactions with chain W, 2 Ligand-Water interactions Metal complexes: W:D.28, W:E.63, W:H.66, H2O.278, H2O.278 ZN.136: 7 residues within 4Å: Chain O: H.174 Chain Q: H.174 Chain V: H.174 Chain W: H.174 Ligands: ZN.88, ZN.100, ZN.130 5 PLIP interactions: 1 interactions with chain O, 1 interactions with chain Q, 1 interactions with chain W, 1 interactions with chain V, 1 Ligand-Water interactions Metal complexes: O:H.174, Q:H.174, W:H.174, V:H.174, H2O.182 ZN.141: 3 residues within 4Å: Chain X: D.28, E.63, H.66 5 PLIP interactions: 3 interactions with chain X, 2 Ligand-Water interactions Metal complexes: X:D.28, X:E.63, X:H.66, H2O.290, H2O.290 ZN.142: 7 residues within 4Å: Chain H: H.174 Chain P: H.174 Chain S: H.174 Chain X: H.174 Ligands: ZN.46, ZN.94, ZN.112 5 PLIP interactions: 1 interactions with chain X, 1 interactions with chain P, 1 interactions with chain S, 1 interactions with chain H, 1 Ligand-Water interactions Metal complexes: X:H.174, P:H.174, S:H.174, H:H.174, H2O.97

24 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 8 residues within 4Å: Chain A: L.29, S.32, I.86 Chain D: L.29, S.32, Y.33, I.86 Ligands: GOL.24 Ligand excluded by PLIP GOL.12: 8 residues within 4Å: Chain B: L.29, S.32, I.86 Chain F: L.29, S.32, Y.33, I.86 Ligands: GOL.36 Ligand excluded by PLIP GOL.18: 8 residues within 4Å: Chain C: L.29, S.32, I.86 Chain J: L.29, S.32, Y.33, I.86 Ligands: GOL.60 Ligand excluded by PLIP GOL.24: 8 residues within 4Å: Chain A: L.29, S.32, Y.33, I.86 Chain D: L.29, S.32, I.86 Ligands: GOL.6 Ligand excluded by PLIP GOL.30: 8 residues within 4Å: Chain E: L.29, S.32, I.86 Chain K: L.29, S.32, Y.33, I.86 Ligands: GOL.66 Ligand excluded by PLIP GOL.36: 8 residues within 4Å: Chain B: L.29, S.32, Y.33, I.86 Chain F: L.29, S.32, I.86 Ligands: GOL.12 Ligand excluded by PLIP GOL.42: 8 residues within 4Å: Chain G: L.29, S.32, I.86 Chain N: L.29, S.32, Y.33, I.86 Ligands: GOL.84 Ligand excluded by PLIP GOL.48: 8 residues within 4Å: Chain H: L.29, S.32, I.86 Chain M: L.29, S.32, Y.33, I.86 Ligands: GOL.78 Ligand excluded by PLIP GOL.54: 8 residues within 4Å: Chain I: L.29, S.32, I.86 Chain S: L.29, S.32, Y.33, I.86 Ligands: GOL.114 Ligand excluded by PLIP GOL.60: 8 residues within 4Å: Chain C: L.29, S.32, Y.33, I.86 Chain J: L.29, S.32, I.86 Ligands: GOL.18 Ligand excluded by PLIP GOL.66: 8 residues within 4Å: Chain E: L.29, S.32, Y.33, I.86 Chain K: L.29, S.32, I.86 Ligands: GOL.30 Ligand excluded by PLIP GOL.72: 8 residues within 4Å: Chain L: L.29, S.32, I.86 Chain Q: L.29, S.32, Y.33, I.86 Ligands: GOL.102 Ligand excluded by PLIP GOL.78: 8 residues within 4Å: Chain H: L.29, S.32, Y.33, I.86 Chain M: L.29, S.32, I.86 Ligands: GOL.48 Ligand excluded by PLIP GOL.84: 8 residues within 4Å: Chain G: L.29, S.32, Y.33, I.86 Chain N: L.29, S.32, I.86 Ligands: GOL.42 Ligand excluded by PLIP GOL.90: 8 residues within 4Å: Chain O: L.29, S.32, I.86 Chain T: L.29, S.32, Y.33, I.86 Ligands: GOL.120 Ligand excluded by PLIP GOL.96: 8 residues within 4Å: Chain P: L.29, S.32, I.86 Chain U: L.29, S.32, Y.33, I.86 Ligands: GOL.126 Ligand excluded by PLIP GOL.102: 8 residues within 4Å: Chain L: L.29, S.32, Y.33, I.86 Chain Q: L.29, S.32, I.86 Ligands: GOL.72 Ligand excluded by PLIP GOL.108: 8 residues within 4Å: Chain R: L.29, S.32, I.86 Chain W: L.29, S.32, Y.33, I.86 Ligands: GOL.138 Ligand excluded by PLIP GOL.114: 8 residues within 4Å: Chain I: L.29, S.32, Y.33, I.86 Chain S: L.29, S.32, I.86 Ligands: GOL.54 Ligand excluded by PLIP GOL.120: 8 residues within 4Å: Chain O: L.29, S.32, Y.33, I.86 Chain T: L.29, S.32, I.86 Ligands: GOL.90 Ligand excluded by PLIP GOL.126: 8 residues within 4Å: Chain P: L.29, S.32, Y.33, I.86 Chain U: L.29, S.32, I.86 Ligands: GOL.96 Ligand excluded by PLIP GOL.132: 8 residues within 4Å: Chain V: L.29, S.32, I.86 Chain X: L.29, S.32, Y.33, I.86 Ligands: GOL.144 Ligand excluded by PLIP GOL.138: 8 residues within 4Å: Chain R: L.29, S.32, Y.33, I.86 Chain W: L.29, S.32, I.86 Ligands: GOL.108 Ligand excluded by PLIP GOL.144: 8 residues within 4Å: Chain V: L.29, S.32, Y.33, I.86 Chain X: L.29, S.32, I.86 Ligands: GOL.132 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Toussaint, L. et al., High-Resolution X-Ray Structures of Human Apoferritin H-Chain Mutants Correlated with Their Activity and Metal-Binding Sites. J.Mol.Biol. (2007)

Release Date

2006-12-13

Peptides

FERRITIN HEAVY CHAIN: ABCDEFGHIJKLMNOPQRSTUVWX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

G
A

H
A

I
A

J
A

K
A

L
A

M
A

N
A

O
A

P
A

Q
A

R
A

S
A

T
A

U
A

V
A

W
A

X
A

FERRITIN HEAVY CHAIN

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