SMTL ID : 2chp.1

Crystal structure of the dodecameric ferritin MrgA from B. subtilis 168

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-12-mer

Ligands

6 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 11 residues within 4Å: Chain B: P.41, H.42, T.45 Chain F: P.41, H.42, T.45 Chain J: P.41, H.42, T.45 Ligands: PO4.3, PO4.5 10 PLIP interactions: 5 interactions with chain B, 2 interactions with chain J, 3 interactions with chain F Hydrogen bonds: B:T.45, B:T.45, F:T.45, F:T.45 Water bridges: B:T.45, B:T.45, J:T.45 Salt bridges: B:H.42, J:H.42, F:H.42 PO4.2: 8 residues within 4Å: Chain A: H.42, T.45 Chain D: P.41, H.42, T.45 Chain K: P.41, H.42, T.45 11 PLIP interactions: 4 interactions with chain D, 4 interactions with chain A, 3 interactions with chain K Hydrogen bonds: D:P.41, D:T.45, A:T.45, K:T.45 Water bridges: D:T.45, A:P.41, A:H.42, K:T.45 Salt bridges: D:H.42, A:H.42, K:H.42 PO4.3: 11 residues within 4Å: Chain B: P.41, H.42, T.45 Chain F: P.41, H.42, T.45 Chain J: P.41, H.42, T.45 Ligands: PO4.1, PO4.5 10 PLIP interactions: 3 interactions with chain B, 2 interactions with chain J, 5 interactions with chain F Hydrogen bonds: B:T.45, J:T.45, F:T.45, F:T.45 Water bridges: B:T.45, F:T.45, F:T.45 Salt bridges: B:H.42, J:H.42, F:H.42 PO4.4: 8 residues within 4Å: Chain C: P.41, H.42, T.45 Chain E: H.42, T.45 Chain H: P.41, H.42, T.45 10 PLIP interactions: 3 interactions with chain H, 3 interactions with chain C, 4 interactions with chain E Hydrogen bonds: H:P.41, E:T.45 Water bridges: H:T.45, C:T.45, C:T.45, E:P.41, E:H.42 Salt bridges: H:H.42, C:H.42, E:H.42 PO4.5: 11 residues within 4Å: Chain B: P.41, H.42, T.45 Chain F: P.41, H.42, T.45 Chain J: P.41, H.42, T.45 Ligands: PO4.1, PO4.3 12 PLIP interactions: 4 interactions with chain B, 5 interactions with chain J, 3 interactions with chain F Hydrogen bonds: B:P.41, B:T.45, B:T.45, J:T.45, J:T.45, F:T.45 Salt bridges: B:H.42, J:H.42, F:H.42 Water bridges: J:T.45, J:T.45, F:T.45 PO4.6: 8 residues within 4Å: Chain G: P.41, H.42, T.45 Chain I: H.42, T.45 Chain L: P.41, H.42, T.45 10 PLIP interactions: 4 interactions with chain I, 3 interactions with chain L, 3 interactions with chain G Hydrogen bonds: I:T.45, L:P.41, G:T.45 Water bridges: I:P.41, I:H.42, L:T.45, G:T.45 Salt bridges: I:H.42, L:H.42, G:H.42

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schonafinger, A. et al., Morphology of Dry Solid-Supported Protein Monolayers Dependent on the Substrate and Protein Surface Properties. Langmuir (2006)

Release Date

2007-04-03

Peptides

METALLOREGULATION DNA-BINDING STRESS PROTEIN: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
A

F
B

G
C

H
D

I
A

J
B

K
C

L
D

METALLOREGULATION DNA-BINDING STRESS PROTEIN