- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- homo-dimer
- Ligands
- 6 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 2 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
NAG-NAG-BMA-MAN.4: 9 residues within 4Å:- Chain A: S.588, S.591, A.592, N.595, Q.697
- Chain B: H.69, E.233, Y.234, R.311
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:E.233, B:E.233, B:R.311
NAG-NAG-BMA-MAN.16: 9 residues within 4Å:- Chain A: H.69, E.233, Y.234, R.311
- Chain B: S.588, S.591, A.592, N.595, Q.697
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:E.233, A:E.233, A:R.311
- 2 x MET: METHIONINE(Non-covalent)
MET.5: 12 residues within 4Å:- Chain A: R.167, N.214, E.381, E.382, G.384, L.385, G.475, Y.509, H.510, K.656, Y.657
- Ligands: ZN.6
9 PLIP interactions:9 interactions with chain A- Hydrogen bonds: A:E.381, A:Y.509
- Water bridges: A:N.214, A:E.382, A:N.476, A:N.476, A:N.476
- Salt bridges: A:R.167, A:H.510
MET.17: 12 residues within 4Å:- Chain B: R.167, N.214, E.381, E.382, G.384, L.385, G.475, Y.509, H.510, K.656, Y.657
- Ligands: ZN.18
9 PLIP interactions:9 interactions with chain B- Hydrogen bonds: B:E.381, B:Y.509
- Water bridges: B:N.214, B:E.382, B:N.476, B:N.476, B:N.476
- Salt bridges: B:R.167, B:H.510
- 4 x ZN: ZINC ION(Non-covalent)
ZN.6: 5 residues within 4Å:- Chain A: D.344, E.382, H.510
- Ligands: MET.5, ZN.7
5 PLIP interactions:4 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.344, A:E.382, A:E.382, A:H.510, H2O.9
ZN.7: 6 residues within 4Å:- Chain A: H.334, D.344, E.381, E.382, D.410
- Ligands: ZN.6
5 PLIP interactions:4 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:H.334, A:D.344, A:D.410, A:D.410, H2O.9
ZN.18: 5 residues within 4Å:- Chain B: D.344, E.382, H.510
- Ligands: MET.17, ZN.19
5 PLIP interactions:4 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:D.344, B:E.382, B:E.382, B:H.510, H2O.17
ZN.19: 6 residues within 4Å:- Chain B: H.334, D.344, E.381, E.382, D.410
- Ligands: ZN.18
5 PLIP interactions:4 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:H.334, B:D.344, B:D.410, B:D.410, H2O.17
- 2 x CA: CALCIUM ION(Non-covalent)
CA.8: 4 residues within 4Å:- Chain A: T.226, Y.229, E.390, E.393
5 PLIP interactions:4 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:T.226, A:E.390, A:E.390, A:E.393, H2O.3
CA.20: 4 residues within 4Å:- Chain B: T.226, Y.229, E.390, E.393
5 PLIP interactions:4 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:T.226, B:E.390, B:E.390, B:E.393, H2O.11
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.10: 4 residues within 4Å:- Chain A: N.78, T.80, H.81, T.306
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:T.306
- Hydrogen bonds: A:T.80
NAG.11: 2 residues within 4Å:- Chain A: N.152, S.154
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:N.152
NAG.12: 4 residues within 4Å:- Chain A: W.203, N.416, F.522, Y.523
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:W.203, A:Y.523
- Hydrogen bonds: A:W.203, A:F.522
NAG.22: 4 residues within 4Å:- Chain B: N.78, T.80, H.81, T.306
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:T.306
- Hydrogen bonds: B:T.80
NAG.23: 2 residues within 4Å:- Chain B: N.152, S.154
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:N.152
NAG.24: 4 residues within 4Å:- Chain B: W.203, N.416, F.522, Y.523
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:W.203, B:Y.523
- Hydrogen bonds: B:W.203, B:F.522
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Mesters, J.R. et al., Glutamate Carboxypeptidase II. Handbook of Metalloproteins (2011)
- Release Date
- 2007-03-27
- Peptides
- GLUTAMATE CARBOXYPEPTIDASE II: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- homo-dimer
- Ligands
- 6 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 2 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 2 x MET: METHIONINE(Non-covalent)
- 4 x ZN: ZINC ION(Non-covalent)
- 2 x CA: CALCIUM ION(Non-covalent)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Mesters, J.R. et al., Glutamate Carboxypeptidase II. Handbook of Metalloproteins (2011)
- Release Date
- 2007-03-27
- Peptides
- GLUTAMATE CARBOXYPEPTIDASE II: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A