- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.75 Å
- Oligo State
- monomer
- Ligands
- 2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 1 x MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose(Post Translational Modification)
- 1 x MN: MANGANESE (II) ION(Non-covalent)
- 1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
HEM.5: 26 residues within 4Å:- Chain A: P.29, C.30, P.31, A.32, L.33, F.58, I.64, I.69, A.72, L.73, A.76, L.98, F.104, E.105, H.106, S.109, F.110, S.111, R.112, E.184, F.187, I.188, W.214, F.215
- Ligands: MN.4, NO3.22
31 PLIP interactions:31 interactions with chain A,- Hydrophobic interactions: A:P.29, A:P.31, A:A.32, A:L.33, A:F.58, A:F.58, A:F.58, A:I.64, A:I.64, A:A.72, A:L.73, A:A.76, A:L.98, A:F.104, A:F.104, A:E.184, A:F.187, A:F.187, A:F.187, A:I.188, A:W.214, A:W.214
- Hydrogen bonds: A:H.106, A:F.110, A:S.111, A:R.112, A:E.184
- Water bridges: A:Q.181, A:E.184
- Salt bridges: A:H.106
- Metal complexes: A:C.30
- 1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 12 x MAN: alpha-D-mannopyranose(Post Translational Modification)
MAN.7: 5 residues within 4Å:- Chain A: E.236, T.239, S.240, E.267
- Ligands: MAN.9
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:E.267
- Water bridges: A:E.267
MAN.8: 8 residues within 4Å:- Chain A: Y.151, D.201, E.202, P.204, E.236, F.237, S.240
- Ligands: MAN.10
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:Y.151, A:E.202
- Water bridges: A:D.201, A:D.201
MAN.9: 11 residues within 4Å:- Chain A: P.179, N.182, V.183, T.239, S.242, S.243, L.246, G.265, A.266, E.267
- Ligands: MAN.7
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:K.178, A:P.179, A:G.265, A:G.265, A:A.268
MAN.10: 5 residues within 4Å:- Chain A: S.240, S.243, A.244, A.247
- Ligands: MAN.8
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:S.240
MAN.11: 4 residues within 4Å:- Chain A: S.249, V.250, T.251
- Ligands: MAN.14
No protein-ligand interaction detected (PLIP)MAN.12: 6 residues within 4Å:- Chain A: A.152, D.153, E.156, T.251, S.252
- Ligands: MAN.13
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:D.153
MAN.13: 5 residues within 4Å:- Chain A: V.142, Q.160, S.252, P.254
- Ligands: MAN.12
1 PLIP interactions:1 interactions with chain A- Water bridges: A:Q.160
MAN.14: 4 residues within 4Å:- Chain A: V.250, T.253, I.262
- Ligands: MAN.11
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:V.250
MAN.15: 2 residues within 4Å:- Chain A: T.253, S.255
No protein-ligand interaction detected (PLIP)MAN.16: 1 residues within 4Å:- Chain A: S.259
No protein-ligand interaction detected (PLIP)MAN.17: 3 residues within 4Å:- Chain A: S.272, F.273, A.274
No protein-ligand interaction detected (PLIP)MAN.18: 2 residues within 4Å:- Chain A: T.294, L.295
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:L.295
- 3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.19: 7 residues within 4Å:- Chain A: L.71, N.75, I.180, A.268, V.269, L.271
- Ligands: EDO.21
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:N.75, A:V.269
- Water bridges: A:E.267
EDO.20: 9 residues within 4Å:- Chain A: V.68, I.69, E.70, L.71, A.72, V.183, I.235
- Ligands: EDO.21, NO3.22
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:I.69, A:L.71, A:A.72
- Water bridges: A:E.70
EDO.21: 10 residues within 4Å:- Chain A: L.71, A.72, N.75, F.104, I.180, V.183, A.268
- Ligands: EDO.19, EDO.20, NO3.22
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:L.71, A:N.75
- 1 x NO3: NITRATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kuhnel, K. et al., Crystal Structures of Chloroperoxidase with its Bound Substrates and Complexed with Formate, Acetate, and Nitrate. J.Biol.Chem. (2006)
- Release Date
- 2006-06-12
- Peptides
- CHLOROPEROXIDASE: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.75 Å
- Oligo State
- monomer
- Ligands
- 2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 1 x MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose(Post Translational Modification)
- 1 x MN: MANGANESE (II) ION(Non-covalent)
- 1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 12 x MAN: alpha-D-mannopyranose(Post Translational Modification)
- 3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 1 x NO3: NITRATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kuhnel, K. et al., Crystal Structures of Chloroperoxidase with its Bound Substrates and Complexed with Formate, Acetate, and Nitrate. J.Biol.Chem. (2006)
- Release Date
- 2006-06-12
- Peptides
- CHLOROPEROXIDASE: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A