- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-trimer
- Ligands
- 15 x MG: MAGNESIUM ION(Non-covalent)
- 3 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)
TRS.6: 4 residues within 4Å:- Chain A: Q.25, D.38, S.39, Y.40
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:S.39, A:Y.40
- Water bridges: A:Q.25
TRS.14: 4 residues within 4Å:- Chain B: Q.25, D.38, S.39, Y.40
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:S.39, B:Y.40
- Water bridges: B:Q.25
TRS.22: 4 residues within 4Å:- Chain C: Q.25, D.38, S.39, Y.40
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:S.39, C:Y.40
- Water bridges: C:Q.25
- 3 x GNP: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER(Non-covalent)
GNP.7: 27 residues within 4Å:- Chain A: A.11, G.12, G.13, V.14, G.15, K.16, S.17, A.18, F.28, V.29, D.30, E.31, C.32, D.33, A.59, G.60, E.63, N.116, K.117, D.119, L.120, S.145, A.146, K.147
- Ligands: MG.2, MG.4, XY2.8
22 PLIP interactions:22 interactions with chain A- Hydrogen bonds: A:G.13, A:V.14, A:G.15, A:K.16, A:K.16, A:S.17, A:S.17, A:A.18, A:V.29, A:D.33, A:G.60, A:N.116, A:K.117, A:K.117, A:A.146, A:K.147
- Water bridges: A:S.17, A:G.60, A:E.62
- Salt bridges: A:D.119
- pi-Stacking: A:F.28, A:F.28
GNP.15: 27 residues within 4Å:- Chain B: A.11, G.12, G.13, V.14, G.15, K.16, S.17, A.18, F.28, V.29, D.30, E.31, C.32, D.33, A.59, G.60, E.63, N.116, K.117, D.119, L.120, S.145, A.146, K.147
- Ligands: MG.10, MG.12, XY2.16
22 PLIP interactions:22 interactions with chain B- Hydrogen bonds: B:G.13, B:V.14, B:G.15, B:K.16, B:K.16, B:S.17, B:S.17, B:A.18, B:V.29, B:D.33, B:G.60, B:N.116, B:K.117, B:K.117, B:A.146, B:K.147
- Water bridges: B:S.17, B:G.60, B:E.62
- Salt bridges: B:D.119
- pi-Stacking: B:F.28, B:F.28
GNP.23: 27 residues within 4Å:- Chain C: A.11, G.12, G.13, V.14, G.15, K.16, S.17, A.18, F.28, V.29, D.30, E.31, C.32, D.33, A.59, G.60, E.63, N.116, K.117, D.119, L.120, S.145, A.146, K.147
- Ligands: MG.18, MG.20, XY2.24
22 PLIP interactions:22 interactions with chain C- Hydrogen bonds: C:G.13, C:V.14, C:G.15, C:K.16, C:K.16, C:S.17, C:S.17, C:A.18, C:V.29, C:D.33, C:G.60, C:N.116, C:K.117, C:K.117, C:A.146, C:K.147
- Water bridges: C:S.17, C:G.60, C:E.62
- Salt bridges: C:D.119
- pi-Stacking: C:F.28, C:F.28
- 3 x XY2: N,N'-DIMETHYL-N-(ACETYL)-N'-(7-NITROBENZ-2-OXA-1,3-DIAZOL-4-YL)ETHYLENEDIAMINE(Covalent)
XY2.8: 3 residues within 4Å:- Chain A: E.31, C.32
- Ligands: GNP.7
No protein-ligand interaction detected (PLIP)XY2.16: 3 residues within 4Å:- Chain B: E.31, C.32
- Ligands: GNP.15
No protein-ligand interaction detected (PLIP)XY2.24: 3 residues within 4Å:- Chain C: E.31, C.32
- Ligands: GNP.23
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Klink, B.U. et al., A Newly Designed Microspectrofluorometer for Kinetic Studies on Protein Crystals in Combination with X-Ray Diffraction. Biophys.J. (2006)
- Release Date
- 2006-05-31
- Peptides
- GTPASE HRAS: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
XB
XC
X
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-trimer
- Ligands
- 15 x MG: MAGNESIUM ION(Non-covalent)
- 3 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)
- 3 x GNP: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER(Non-covalent)
- 3 x XY2: N,N'-DIMETHYL-N-(ACETYL)-N'-(7-NITROBENZ-2-OXA-1,3-DIAZOL-4-YL)ETHYLENEDIAMINE(Covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Klink, B.U. et al., A Newly Designed Microspectrofluorometer for Kinetic Studies on Protein Crystals in Combination with X-Ray Diffraction. Biophys.J. (2006)
- Release Date
- 2006-05-31
- Peptides
- GTPASE HRAS: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
XB
XC
X