SMTL ID : 2clb.2 (1 other biounit)

THE STRUCTURE OF THE DPS-LIKE PROTEIN FROM SULFOLOBUS SOLFATARICUS REVEALS A BACTERIOFERRITIN-LIKE DI-METAL BINDING SITE WITHIN A DPS-LIKE DODECAMERIC ASSEMBLY

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-12-mer

Ligands

12 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: E.37, D.70, H.73, E.156 Ligands: FE.2 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.37, A:E.37, A:D.70, A:H.73, A:E.156 ZN.3: 5 residues within 4Å: Chain B: E.37, D.70, H.73, E.156 Ligands: FE.4 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:E.37, B:E.37, B:D.70, B:H.73, B:E.156 ZN.5: 5 residues within 4Å: Chain C: E.37, D.70, H.73, E.156 Ligands: FE.6 5 PLIP interactions: 5 interactions with chain C Metal complexes: C:E.37, C:E.37, C:D.70, C:H.73, C:E.156 ZN.7: 5 residues within 4Å: Chain D: E.37, D.70, H.73, E.156 Ligands: FE.8 5 PLIP interactions: 5 interactions with chain D Metal complexes: D:E.37, D:E.37, D:D.70, D:H.73, D:E.156 ZN.9: 5 residues within 4Å: Chain E: E.37, D.70, H.73, E.156 Ligands: FE.10 5 PLIP interactions: 5 interactions with chain E Metal complexes: E:E.37, E:E.37, E:D.70, E:H.73, E:E.156 ZN.11: 5 residues within 4Å: Chain F: E.37, D.70, H.73, E.156 Ligands: FE.12 5 PLIP interactions: 5 interactions with chain F Metal complexes: F:E.37, F:E.37, F:D.70, F:H.73, F:E.156 ZN.13: 5 residues within 4Å: Chain G: E.37, D.70, H.73, E.156 Ligands: FE.14 5 PLIP interactions: 5 interactions with chain G Metal complexes: G:E.37, G:E.37, G:D.70, G:H.73, G:E.156 ZN.15: 5 residues within 4Å: Chain H: E.37, D.70, H.73, E.156 Ligands: FE.16 5 PLIP interactions: 5 interactions with chain H Metal complexes: H:E.37, H:E.37, H:D.70, H:H.73, H:E.156 ZN.17: 5 residues within 4Å: Chain I: E.37, D.70, H.73, E.156 Ligands: FE.18 5 PLIP interactions: 5 interactions with chain I Metal complexes: I:E.37, I:E.37, I:D.70, I:H.73, I:E.156 ZN.19: 5 residues within 4Å: Chain J: E.37, D.70, H.73, E.156 Ligands: FE.20 5 PLIP interactions: 5 interactions with chain J Metal complexes: J:E.37, J:E.37, J:D.70, J:H.73, J:E.156 ZN.21: 5 residues within 4Å: Chain K: E.37, D.70, H.73, E.156 Ligands: FE.22 5 PLIP interactions: 5 interactions with chain K Metal complexes: K:E.37, K:E.37, K:D.70, K:H.73, K:E.156 ZN.23: 5 residues within 4Å: Chain L: E.37, D.70, H.73, E.156 Ligands: FE.24 5 PLIP interactions: 5 interactions with chain L Metal complexes: L:E.37, L:E.37, L:D.70, L:H.73, L:E.156

12 x FE: FE (III) ION(Non-covalent)

FE.2: 5 residues within 4Å: Chain A: D.70, E.124, E.156, H.159 Ligands: ZN.1 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.70, A:E.124, A:E.156, A:H.159, H2O.14 FE.4: 5 residues within 4Å: Chain B: D.70, E.124, E.156, H.159 Ligands: ZN.3 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.70, B:E.124, B:E.156, B:H.159, H2O.19 FE.6: 5 residues within 4Å: Chain C: D.70, E.124, E.156, H.159 Ligands: ZN.5 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:D.70, C:E.124, C:E.156, C:H.159, H2O.36 FE.8: 5 residues within 4Å: Chain D: D.70, E.124, E.156, H.159 Ligands: ZN.7 5 PLIP interactions: 4 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:D.70, D:E.124, D:E.156, D:H.159, H2O.59 FE.10: 5 residues within 4Å: Chain E: D.70, E.124, E.156, H.159 Ligands: ZN.9 5 PLIP interactions: 4 interactions with chain E, 1 Ligand-Water interactions Metal complexes: E:D.70, E:E.124, E:E.156, E:H.159, H2O.76 FE.12: 5 residues within 4Å: Chain F: D.70, E.124, E.156, H.159 Ligands: ZN.11 5 PLIP interactions: 4 interactions with chain F, 1 Ligand-Water interactions Metal complexes: F:D.70, F:E.124, F:E.156, F:H.159, H2O.81 FE.14: 5 residues within 4Å: Chain G: D.70, E.124, E.156, H.159 Ligands: ZN.13 5 PLIP interactions: 4 interactions with chain G, 1 Ligand-Water interactions Metal complexes: G:D.70, G:E.124, G:E.156, G:H.159, H2O.98 FE.16: 5 residues within 4Å: Chain H: D.70, E.124, E.156, H.159 Ligands: ZN.15 5 PLIP interactions: 4 interactions with chain H, 1 Ligand-Water interactions Metal complexes: H:D.70, H:E.124, H:E.156, H:H.159, H2O.121 FE.18: 5 residues within 4Å: Chain I: D.70, E.124, E.156, H.159 Ligands: ZN.17 5 PLIP interactions: 4 interactions with chain I, 1 Ligand-Water interactions Metal complexes: I:D.70, I:E.124, I:E.156, I:H.159, H2O.138 FE.20: 5 residues within 4Å: Chain J: D.70, E.124, E.156, H.159 Ligands: ZN.19 5 PLIP interactions: 4 interactions with chain J, 1 Ligand-Water interactions Metal complexes: J:D.70, J:E.124, J:E.156, J:H.159, H2O.143 FE.22: 5 residues within 4Å: Chain K: D.70, E.124, E.156, H.159 Ligands: ZN.21 5 PLIP interactions: 4 interactions with chain K, 1 Ligand-Water interactions Metal complexes: K:D.70, K:E.124, K:E.156, K:H.159, H2O.160 FE.24: 5 residues within 4Å: Chain L: D.70, E.124, E.156, H.159 Ligands: ZN.23 5 PLIP interactions: 4 interactions with chain L, 1 Ligand-Water interactions Metal complexes: L:D.70, L:E.124, L:E.156, L:H.159, H2O.183

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gauss, G.H. et al., Structure of the Dps-Like Protein from Sulfolobus Solfataricus Reveals a Bacterioferritin-Like Dimetal Binding Site within a Dps-Like Dodecameric Assembly. Biochemistry (2006)

Release Date

2006-07-17

Peptides

DPS-LIKE PROTEIN: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
M

B
N

C
O

D
P

E
M

F
N

G
O

H
P

I
M

J
N

K
O

L
P

DPS-LIKE PROTEIN

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