SMTL ID : 2clu.1

Recombinant human H ferritin, K86Q and E107D mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-24-mer

Ligands

48 x CA: CALCIUM ION(Non-covalent)

CA.1: 2 residues within 4Å: Chain A: Q.87 Chain D: D.85 2 PLIP interactions: 2 interactions with chain D Metal complexes: D:D.85, D:D.85 CA.2: 8 residues within 4Å: Chain A: D.132, E.135 Chain B: D.132, E.135 Chain C: D.132, E.135 Ligands: CA.6, CA.10 6 PLIP interactions: 2 interactions with chain C, 2 interactions with chain B, 2 interactions with chain A Metal complexes: C:D.132, C:E.135, B:D.132, B:E.135, A:D.132, A:E.135 CA.5: 2 residues within 4Å: Chain B: Q.87 Chain F: D.85 2 PLIP interactions: 2 interactions with chain F Metal complexes: F:D.85, F:D.85 CA.6: 8 residues within 4Å: Chain A: D.132, E.135 Chain B: D.132, E.135 Chain C: D.132, E.135 Ligands: CA.2, CA.10 6 PLIP interactions: 2 interactions with chain C, 2 interactions with chain B, 2 interactions with chain A Metal complexes: C:D.132, C:E.135, B:D.132, B:E.135, A:D.132, A:E.135 CA.9: 2 residues within 4Å: Chain C: Q.87 Chain J: D.85 2 PLIP interactions: 2 interactions with chain J Metal complexes: J:D.85, J:D.85 CA.10: 8 residues within 4Å: Chain A: D.132, E.135 Chain B: D.132, E.135 Chain C: D.132, E.135 Ligands: CA.2, CA.6 6 PLIP interactions: 2 interactions with chain C, 2 interactions with chain B, 2 interactions with chain A Metal complexes: C:D.132, C:E.135, B:D.132, B:E.135, A:D.132, A:E.135 CA.13: 2 residues within 4Å: Chain A: D.85 Chain D: Q.87 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.85, A:D.85 CA.14: 8 residues within 4Å: Chain D: D.132, E.135 Chain E: D.132, E.135 Chain G: D.132, E.135 Ligands: CA.18, CA.26 6 PLIP interactions: 2 interactions with chain E, 2 interactions with chain D, 2 interactions with chain G Metal complexes: E:D.132, E:E.135, D:D.132, D:E.135, G:D.132, G:E.135 CA.17: 2 residues within 4Å: Chain E: Q.87 Chain K: D.85 2 PLIP interactions: 2 interactions with chain K Metal complexes: K:D.85, K:D.85 CA.18: 8 residues within 4Å: Chain D: D.132, E.135 Chain E: D.132, E.135 Chain G: D.132, E.135 Ligands: CA.14, CA.26 6 PLIP interactions: 2 interactions with chain E, 2 interactions with chain D, 2 interactions with chain G Metal complexes: E:D.132, E:E.135, D:D.132, D:E.135, G:D.132, G:E.135 CA.21: 2 residues within 4Å: Chain B: D.85 Chain F: Q.87 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:D.85, B:D.85 CA.22: 8 residues within 4Å: Chain F: D.132, E.135 Chain H: D.132, E.135 Chain I: D.132, E.135 Ligands: CA.30, CA.34 6 PLIP interactions: 2 interactions with chain H, 2 interactions with chain F, 2 interactions with chain I Metal complexes: H:D.132, H:E.135, F:D.132, F:E.135, I:D.132, I:E.135 CA.25: 2 residues within 4Å: Chain G: Q.87 Chain N: D.85 2 PLIP interactions: 2 interactions with chain N Metal complexes: N:D.85, N:D.85 CA.26: 8 residues within 4Å: Chain D: D.132, E.135 Chain E: D.132, E.135 Chain G: D.132, E.135 Ligands: CA.14, CA.18 6 PLIP interactions: 2 interactions with chain E, 2 interactions with chain G, 2 interactions with chain D Metal complexes: E:D.132, E:E.135, G:D.132, G:E.135, D:D.132, D:E.135 CA.29: 2 residues within 4Å: Chain H: Q.87 Chain M: D.85 2 PLIP interactions: 2 interactions with chain M Metal complexes: M:D.85, M:D.85 CA.30: 8 residues within 4Å: Chain F: D.132, E.135 Chain H: D.132, E.135 Chain I: D.132, E.135 Ligands: CA.22, CA.34 6 PLIP interactions: 2 interactions with chain H, 2 interactions with chain F, 2 interactions with chain I Metal complexes: H:D.132, H:E.135, F:D.132, F:E.135, I:D.132, I:E.135 CA.33: 2 residues within 4Å: Chain I: Q.87 Chain S: D.85 2 PLIP interactions: 2 interactions with chain S Metal complexes: S:D.85, S:D.85 CA.34: 8 residues within 4Å: Chain F: D.132, E.135 Chain H: D.132, E.135 Chain I: D.132, E.135 Ligands: CA.22, CA.30 6 PLIP interactions: 2 interactions with chain H, 2 interactions with chain F, 2 interactions with chain I Metal complexes: H:D.132, H:E.135, F:D.132, F:E.135, I:D.132, I:E.135 CA.37: 2 residues within 4Å: Chain C: D.85 Chain J: Q.87 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:D.85, C:D.85 CA.38: 8 residues within 4Å: Chain J: D.132, E.135 Chain L: D.132, E.135 Chain O: D.132, E.135 Ligands: CA.46, CA.58 6 PLIP interactions: 2 interactions with chain L, 2 interactions with chain J, 2 interactions with chain O Metal complexes: L:D.132, L:E.135, J:D.132, J:E.135, O:D.132, O:E.135 CA.41: 2 residues within 4Å: Chain E: D.85 Chain K: Q.87 2 PLIP interactions: 2 interactions with chain E Metal complexes: E:D.85, E:D.85 CA.42: 8 residues within 4Å: Chain K: D.132, E.135 Chain M: D.132, E.135 Chain P: D.132, E.135 Ligands: CA.50, CA.62 6 PLIP interactions: 2 interactions with chain M, 2 interactions with chain P, 2 interactions with chain K Metal complexes: M:D.132, M:E.135, P:D.132, P:E.135, K:D.132, K:E.135 CA.45: 2 residues within 4Å: Chain L: Q.87 Chain Q: D.85 2 PLIP interactions: 2 interactions with chain Q Metal complexes: Q:D.85, Q:D.85 CA.46: 8 residues within 4Å: Chain J: D.132, E.135 Chain L: D.132, E.135 Chain O: D.132, E.135 Ligands: CA.38, CA.58 6 PLIP interactions: 2 interactions with chain L, 2 interactions with chain O, 2 interactions with chain J Metal complexes: L:D.132, L:E.135, O:D.132, O:E.135, J:D.132, J:E.135 CA.49: 2 residues within 4Å: Chain H: D.85 Chain M: Q.87 2 PLIP interactions: 2 interactions with chain H Metal complexes: H:D.85, H:D.85 CA.50: 8 residues within 4Å: Chain K: D.132, E.135 Chain M: D.132, E.135 Chain P: D.132, E.135 Ligands: CA.42, CA.62 6 PLIP interactions: 2 interactions with chain M, 2 interactions with chain P, 2 interactions with chain K Metal complexes: M:D.132, M:E.135, P:D.132, P:E.135, K:D.132, K:E.135 CA.53: 2 residues within 4Å: Chain G: D.85 Chain N: Q.87 2 PLIP interactions: 2 interactions with chain G Metal complexes: G:D.85, G:D.85 CA.54: 8 residues within 4Å: Chain N: D.132, E.135 Chain Q: D.132, E.135 Chain R: D.132, E.135 Ligands: CA.66, CA.70 6 PLIP interactions: 2 interactions with chain R, 2 interactions with chain N, 2 interactions with chain Q Metal complexes: R:D.132, R:E.135, N:D.132, N:E.135, Q:D.132, Q:E.135 CA.57: 2 residues within 4Å: Chain O: Q.87 Chain T: D.85 2 PLIP interactions: 2 interactions with chain T Metal complexes: T:D.85, T:D.85 CA.58: 8 residues within 4Å: Chain J: D.132, E.135 Chain L: D.132, E.135 Chain O: D.132, E.135 Ligands: CA.38, CA.46 6 PLIP interactions: 2 interactions with chain L, 2 interactions with chain O, 2 interactions with chain J Metal complexes: L:D.132, L:E.135, O:D.132, O:E.135, J:D.132, J:E.135 CA.61: 2 residues within 4Å: Chain P: Q.87 Chain U: D.85 2 PLIP interactions: 2 interactions with chain U Metal complexes: U:D.85, U:D.85 CA.62: 8 residues within 4Å: Chain K: D.132, E.135 Chain M: D.132, E.135 Chain P: D.132, E.135 Ligands: CA.42, CA.50 6 PLIP interactions: 2 interactions with chain M, 2 interactions with chain K, 2 interactions with chain P Metal complexes: M:D.132, M:E.135, K:D.132, K:E.135, P:D.132, P:E.135 CA.65: 2 residues within 4Å: Chain L: D.85 Chain Q: Q.87 2 PLIP interactions: 2 interactions with chain L Metal complexes: L:D.85, L:D.85 CA.66: 8 residues within 4Å: Chain N: D.132, E.135 Chain Q: D.132, E.135 Chain R: D.132, E.135 Ligands: CA.54, CA.70 6 PLIP interactions: 2 interactions with chain N, 2 interactions with chain R, 2 interactions with chain Q Metal complexes: N:D.132, N:E.135, R:D.132, R:E.135, Q:D.132, Q:E.135 CA.69: 2 residues within 4Å: Chain R: Q.87 Chain W: D.85 2 PLIP interactions: 2 interactions with chain W Metal complexes: W:D.85, W:D.85 CA.70: 8 residues within 4Å: Chain N: D.132, E.135 Chain Q: D.132, E.135 Chain R: D.132, E.135 Ligands: CA.54, CA.66 6 PLIP interactions: 2 interactions with chain N, 2 interactions with chain R, 2 interactions with chain Q Metal complexes: N:D.132, N:E.135, R:D.132, R:E.135, Q:D.132, Q:E.135 CA.73: 2 residues within 4Å: Chain I: D.85 Chain S: Q.87 2 PLIP interactions: 2 interactions with chain I Metal complexes: I:D.85, I:D.85 CA.74: 8 residues within 4Å: Chain S: D.132, E.135 Chain T: D.132, E.135 Chain V: D.132, E.135 Ligands: CA.78, CA.86 6 PLIP interactions: 2 interactions with chain S, 2 interactions with chain T, 2 interactions with chain V Metal complexes: S:D.132, S:E.135, T:D.132, T:E.135, V:D.132, V:E.135 CA.77: 2 residues within 4Å: Chain O: D.85 Chain T: Q.87 2 PLIP interactions: 2 interactions with chain O Metal complexes: O:D.85, O:D.85 CA.78: 8 residues within 4Å: Chain S: D.132, E.135 Chain T: D.132, E.135 Chain V: D.132, E.135 Ligands: CA.74, CA.86 6 PLIP interactions: 2 interactions with chain S, 2 interactions with chain T, 2 interactions with chain V Metal complexes: S:D.132, S:E.135, T:D.132, T:E.135, V:D.132, V:E.135 CA.81: 2 residues within 4Å: Chain P: D.85 Chain U: Q.87 2 PLIP interactions: 2 interactions with chain P Metal complexes: P:D.85, P:D.85 CA.82: 8 residues within 4Å: Chain U: D.132, E.135 Chain W: D.132, E.135 Chain X: D.132, E.135 Ligands: CA.90, CA.94 6 PLIP interactions: 2 interactions with chain X, 2 interactions with chain U, 2 interactions with chain W Metal complexes: X:D.132, X:E.135, U:D.132, U:E.135, W:D.132, W:E.135 CA.85: 2 residues within 4Å: Chain V: Q.87 Chain X: D.85 2 PLIP interactions: 2 interactions with chain X Metal complexes: X:D.85, X:D.85 CA.86: 8 residues within 4Å: Chain S: D.132, E.135 Chain T: D.132, E.135 Chain V: D.132, E.135 Ligands: CA.74, CA.78 6 PLIP interactions: 2 interactions with chain V, 2 interactions with chain T, 2 interactions with chain S Metal complexes: V:D.132, V:E.135, T:D.132, T:E.135, S:D.132, S:E.135 CA.89: 2 residues within 4Å: Chain R: D.85 Chain W: Q.87 2 PLIP interactions: 2 interactions with chain R Metal complexes: R:D.85, R:D.85 CA.90: 8 residues within 4Å: Chain U: D.132, E.135 Chain W: D.132, E.135 Chain X: D.132, E.135 Ligands: CA.82, CA.94 6 PLIP interactions: 2 interactions with chain X, 2 interactions with chain U, 2 interactions with chain W Metal complexes: X:D.132, X:E.135, U:D.132, U:E.135, W:D.132, W:E.135 CA.93: 2 residues within 4Å: Chain V: D.85 Chain X: Q.87 2 PLIP interactions: 2 interactions with chain V Metal complexes: V:D.85, V:D.85 CA.94: 8 residues within 4Å: Chain U: D.132, E.135 Chain W: D.132, E.135 Chain X: D.132, E.135 Ligands: CA.82, CA.90 6 PLIP interactions: 2 interactions with chain X, 2 interactions with chain U, 2 interactions with chain W Metal complexes: X:D.132, X:E.135, U:D.132, U:E.135, W:D.132, W:E.135

24 x ZN: ZINC ION(Non-covalent)

ZN.3: 3 residues within 4Å: Chain A: E.28, E.63, H.66 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.28, A:E.63, A:H.66 ZN.7: 3 residues within 4Å: Chain B: E.28, E.63, H.66 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:E.28, B:E.63, B:H.66 ZN.11: 3 residues within 4Å: Chain C: E.28, E.63, H.66 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:E.28, C:E.63, C:H.66 ZN.15: 3 residues within 4Å: Chain D: E.28, E.63, H.66 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:E.28, D:E.63, D:H.66 ZN.19: 3 residues within 4Å: Chain E: E.28, E.63, H.66 3 PLIP interactions: 3 interactions with chain E Metal complexes: E:E.28, E:E.63, E:H.66 ZN.23: 3 residues within 4Å: Chain F: E.28, E.63, H.66 3 PLIP interactions: 3 interactions with chain F Metal complexes: F:E.28, F:E.63, F:H.66 ZN.27: 3 residues within 4Å: Chain G: E.28, E.63, H.66 3 PLIP interactions: 3 interactions with chain G Metal complexes: G:E.28, G:E.63, G:H.66 ZN.31: 3 residues within 4Å: Chain H: E.28, E.63, H.66 3 PLIP interactions: 3 interactions with chain H Metal complexes: H:E.28, H:E.63, H:H.66 ZN.35: 3 residues within 4Å: Chain I: E.28, E.63, H.66 3 PLIP interactions: 3 interactions with chain I Metal complexes: I:E.28, I:E.63, I:H.66 ZN.39: 3 residues within 4Å: Chain J: E.28, E.63, H.66 3 PLIP interactions: 3 interactions with chain J Metal complexes: J:E.28, J:E.63, J:H.66 ZN.43: 3 residues within 4Å: Chain K: E.28, E.63, H.66 3 PLIP interactions: 3 interactions with chain K Metal complexes: K:E.28, K:E.63, K:H.66 ZN.47: 3 residues within 4Å: Chain L: E.28, E.63, H.66 3 PLIP interactions: 3 interactions with chain L Metal complexes: L:E.28, L:E.63, L:H.66 ZN.51: 3 residues within 4Å: Chain M: E.28, E.63, H.66 3 PLIP interactions: 3 interactions with chain M Metal complexes: M:E.28, M:E.63, M:H.66 ZN.55: 3 residues within 4Å: Chain N: E.28, E.63, H.66 3 PLIP interactions: 3 interactions with chain N Metal complexes: N:E.28, N:E.63, N:H.66 ZN.59: 3 residues within 4Å: Chain O: E.28, E.63, H.66 3 PLIP interactions: 3 interactions with chain O Metal complexes: O:E.28, O:E.63, O:H.66 ZN.63: 3 residues within 4Å: Chain P: E.28, E.63, H.66 3 PLIP interactions: 3 interactions with chain P Metal complexes: P:E.28, P:E.63, P:H.66 ZN.67: 3 residues within 4Å: Chain Q: E.28, E.63, H.66 3 PLIP interactions: 3 interactions with chain Q Metal complexes: Q:E.28, Q:E.63, Q:H.66 ZN.71: 3 residues within 4Å: Chain R: E.28, E.63, H.66 3 PLIP interactions: 3 interactions with chain R Metal complexes: R:E.28, R:E.63, R:H.66 ZN.75: 3 residues within 4Å: Chain S: E.28, E.63, H.66 3 PLIP interactions: 3 interactions with chain S Metal complexes: S:E.28, S:E.63, S:H.66 ZN.79: 3 residues within 4Å: Chain T: E.28, E.63, H.66 3 PLIP interactions: 3 interactions with chain T Metal complexes: T:E.28, T:E.63, T:H.66 ZN.83: 3 residues within 4Å: Chain U: E.28, E.63, H.66 3 PLIP interactions: 3 interactions with chain U Metal complexes: U:E.28, U:E.63, U:H.66 ZN.87: 3 residues within 4Å: Chain V: E.28, E.63, H.66 3 PLIP interactions: 3 interactions with chain V Metal complexes: V:E.28, V:E.63, V:H.66 ZN.91: 3 residues within 4Å: Chain W: E.28, E.63, H.66 3 PLIP interactions: 3 interactions with chain W Metal complexes: W:E.28, W:E.63, W:H.66 ZN.95: 3 residues within 4Å: Chain X: E.28, E.63, H.66 3 PLIP interactions: 3 interactions with chain X Metal complexes: X:E.28, X:E.63, X:H.66

24 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 7 residues within 4Å: Chain A: S.32, R.64, I.86 Chain D: S.32, R.64, I.86 Ligands: GOL.16 Ligand excluded by PLIP GOL.8: 7 residues within 4Å: Chain B: S.32, R.64, I.86 Chain F: S.32, R.64, I.86 Ligands: GOL.24 Ligand excluded by PLIP GOL.12: 7 residues within 4Å: Chain C: S.32, R.64, I.86 Chain J: S.32, R.64, I.86 Ligands: GOL.40 Ligand excluded by PLIP GOL.16: 7 residues within 4Å: Chain A: S.32, R.64, I.86 Chain D: S.32, R.64, I.86 Ligands: GOL.4 Ligand excluded by PLIP GOL.20: 7 residues within 4Å: Chain E: S.32, R.64, I.86 Chain K: S.32, R.64, I.86 Ligands: GOL.44 Ligand excluded by PLIP GOL.24: 7 residues within 4Å: Chain B: S.32, R.64, I.86 Chain F: S.32, R.64, I.86 Ligands: GOL.8 Ligand excluded by PLIP GOL.28: 7 residues within 4Å: Chain G: S.32, R.64, I.86 Chain N: S.32, R.64, I.86 Ligands: GOL.56 Ligand excluded by PLIP GOL.32: 7 residues within 4Å: Chain H: S.32, R.64, I.86 Chain M: S.32, R.64, I.86 Ligands: GOL.52 Ligand excluded by PLIP GOL.36: 7 residues within 4Å: Chain I: S.32, R.64, I.86 Chain S: S.32, R.64, I.86 Ligands: GOL.76 Ligand excluded by PLIP GOL.40: 7 residues within 4Å: Chain C: S.32, R.64, I.86 Chain J: S.32, R.64, I.86 Ligands: GOL.12 Ligand excluded by PLIP GOL.44: 7 residues within 4Å: Chain E: S.32, R.64, I.86 Chain K: S.32, R.64, I.86 Ligands: GOL.20 Ligand excluded by PLIP GOL.48: 7 residues within 4Å: Chain L: S.32, R.64, I.86 Chain Q: S.32, R.64, I.86 Ligands: GOL.68 Ligand excluded by PLIP GOL.52: 7 residues within 4Å: Chain H: S.32, R.64, I.86 Chain M: S.32, R.64, I.86 Ligands: GOL.32 Ligand excluded by PLIP GOL.56: 7 residues within 4Å: Chain G: S.32, R.64, I.86 Chain N: S.32, R.64, I.86 Ligands: GOL.28 Ligand excluded by PLIP GOL.60: 7 residues within 4Å: Chain O: S.32, R.64, I.86 Chain T: S.32, R.64, I.86 Ligands: GOL.80 Ligand excluded by PLIP GOL.64: 7 residues within 4Å: Chain P: S.32, R.64, I.86 Chain U: S.32, R.64, I.86 Ligands: GOL.84 Ligand excluded by PLIP GOL.68: 7 residues within 4Å: Chain L: S.32, R.64, I.86 Chain Q: S.32, R.64, I.86 Ligands: GOL.48 Ligand excluded by PLIP GOL.72: 7 residues within 4Å: Chain R: S.32, R.64, I.86 Chain W: S.32, R.64, I.86 Ligands: GOL.92 Ligand excluded by PLIP GOL.76: 7 residues within 4Å: Chain I: S.32, R.64, I.86 Chain S: S.32, R.64, I.86 Ligands: GOL.36 Ligand excluded by PLIP GOL.80: 7 residues within 4Å: Chain O: S.32, R.64, I.86 Chain T: S.32, R.64, I.86 Ligands: GOL.60 Ligand excluded by PLIP GOL.84: 7 residues within 4Å: Chain P: S.32, R.64, I.86 Chain U: S.32, R.64, I.86 Ligands: GOL.64 Ligand excluded by PLIP GOL.88: 7 residues within 4Å: Chain V: S.32, R.64, I.86 Chain X: S.32, R.64, I.86 Ligands: GOL.96 Ligand excluded by PLIP GOL.92: 7 residues within 4Å: Chain R: S.32, R.64, I.86 Chain W: S.32, R.64, I.86 Ligands: GOL.72 Ligand excluded by PLIP GOL.96: 7 residues within 4Å: Chain V: S.32, R.64, I.86 Chain X: S.32, R.64, I.86 Ligands: GOL.88 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Toussaint, L. et al., High-Resolution X-Ray Structures of Human Apoferritin H-Chain Mutants Correlated with Their Activity and Metal-Binding Sites. J.Mol.Biol. (2007)

Release Date

2006-12-13

Peptides

FERRITIN HEAVY CHAIN: ABCDEFGHIJKLMNOPQRSTUVWX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

G
A

H
A

I
A

J
A

K
A

L
A

M
A

N
A

O
A

P
A

Q
A

R
A

S
A

T
A

U
A

V
A

W
A

X
A

FERRITIN HEAVY CHAIN

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