SMTL ID : 2cmk.1

CYTIDINE MONOPHOSPHATE KINASE IN COMPLEX WITH CYTIDINE-DI-PHOSPHATE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: P.13, G.15, A.16, G.17, K.18, G.19 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:P.13, A:G.15, A:A.16, A:G.17, A:K.18, A:G.19 Water bridges: A:K.18, A:K.18 Salt bridges: A:K.18 SO4.2: 3 residues within 4Å: Chain A: G.17, T.20, I.209 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.20, A:T.20

1 x CDP: CYTIDINE-5'-DIPHOSPHATE(Non-covalent)

CDP.3: 13 residues within 4Å: Chain A: S.14, S.36, G.37, Y.40, R.41, S.101, A.104, R.110, G.130, R.131, D.132, D.185, R.188 26 PLIP interactions: 26 interactions with chain A Hydrophobic interactions: A:R.131 Hydrogen bonds: A:S.14, A:S.14, A:S.14, A:S.36, A:R.110, A:R.110, A:R.131, A:D.132, A:D.132, A:D.132, A:D.185, A:R.188, A:R.188 Water bridges: A:G.37, A:R.41, A:R.41, A:R.131, A:R.131, A:R.131, A:R.131 Salt bridges: A:R.41, A:R.41, A:R.131, A:R.131 pi-Stacking: A:Y.40

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Briozzo, P. et al., Structures of escherichia coli CMP kinase alone and in complex with CDP: a new fold of the nucleoside monophosphate binding domain and insights into cytosine nucleotide specificity. Structure (1998)

Release Date

1999-09-20

Peptides

PROTEIN (CYTIDINE MONOPHOSPHATE KINASE): A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PROTEIN (CYTIDINE MONOPHOSPHATE KINASE)

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