SMTL ID : 2cmr.1

Crystal structure of the HIV-1 neutralizing antibody D5 Fab bound to the gp41 inner-core mimetic 5-helix

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 8 residues within 4Å: Chain A: I.145, N.146, Q.202, W.206, K.209 Chain B: L.104 Chain C: W.32, Y.91 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.149, A:W.206, A:K.209 Water bridges: A:Q.202, A:Q.202

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Luftig, M.A. et al., Structural Basis for HIV-1 Neutralization by a Gp41 Fusion Intermediate-Directed Antibody. Nat.Struct.Mol.Biol. (2006)

Release Date

2006-10-16

Peptides

TRANSMEMBRANE GLYCOPROTEIN: A
D5: B
D5: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
H

C
L

TRANSMEMBRANE GLYCOPROTEIN

D5

D5