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SMTL ID : 2cog.1
Crystal structure of oxidized human cytosolic branched-chain aminotransferase complexed with 4-methylvalerate
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 2.10 Å
Oligo State
homo-dimer
Ligands
2 x
PLP
:
PYRIDOXAL-5'-PHOSPHATE
(Covalent)
PLP.1:
15 residues within 4Å:
Chain A:
R.119
,
R.212
,
K.222
,
Y.227
,
E.257
,
T.260
,
M.261
,
N.262
,
L.286
,
G.288
,
V.289
,
T.290
,
G.332
,
T.333
Ligands:
4MV.2
16
PLIP interactions
:
16 interactions with chain A
Hydrophobic interactions:
A:K.222
,
A:L.286
Hydrogen bonds:
A:K.222
,
A:Y.227
,
A:Y.227
,
A:V.289
,
A:T.290
,
A:T.290
,
A:T.333
,
A:T.333
Water bridges:
A:G.97
,
A:R.119
,
A:R.119
,
A:R.119
Salt bridges:
A:R.119
,
A:K.222
PLP.4:
15 residues within 4Å:
Chain B:
R.119
,
R.212
,
K.222
,
Y.227
,
E.257
,
T.260
,
M.261
,
N.262
,
L.286
,
G.288
,
V.289
,
T.290
,
G.332
,
T.333
Ligands:
4MV.5
17
PLIP interactions
:
17 interactions with chain B
Hydrophobic interactions:
B:K.222
,
B:L.286
Hydrogen bonds:
B:Y.227
,
B:Y.227
,
B:N.262
,
B:V.289
,
B:T.290
,
B:T.290
,
B:T.333
,
B:T.333
Water bridges:
B:G.97
,
B:R.119
,
B:R.119
,
B:R.119
,
B:R.291
Salt bridges:
B:R.119
,
B:K.222
2 x
4MV
:
4-METHYL VALERIC ACID
(Non-covalent)
4MV.2:
11 residues within 4Å:
Chain A:
R.163
,
Y.193
,
T.260
,
M.261
,
G.332
,
T.333
,
A.334
Chain B:
Y.90
,
L.173
,
V.175
Ligands:
PLP.1
4
PLIP interactions
:
4 interactions with chain A
Hydrophobic interactions:
A:T.260
Hydrogen bonds:
A:T.260
,
A:T.260
,
A:A.334
4MV.5:
11 residues within 4Å:
Chain A:
Y.90
,
L.173
,
V.175
Chain B:
R.163
,
Y.193
,
T.260
,
M.261
,
G.332
,
T.333
,
A.334
Ligands:
PLP.4
4
PLIP interactions
:
4 interactions with chain B
Hydrophobic interactions:
B:T.260
Hydrogen bonds:
B:T.260
,
B:T.260
,
B:A.334
1 x
MG
:
MAGNESIUM ION
(Non-covalent)
MG.3:
2 residues within 4Å:
Chain B:
D.133
,
E.136
3
PLIP interactions
:
1 interactions with chain B
,
2 Ligand-Water interactions
Metal complexes:
B:D.133
,
H
2
O.7
,
H
2
O.12
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Goto, M. et al., Structural determinants for branched-chain aminotransferase isozyme-specific inhibition by the anticonvulsant drug gabapentin. J.Biol.Chem. (2005)
Release Date
2005-08-30
Peptides
branched chain aminotransferase 1, cytosolic:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
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Secondary Structure
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2° Structure
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branched chain aminotransferase 1, cytosolic
Related Entries With Identical Sequence
2coi.1
|
2coj.1
Cartoon
Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
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Outline
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