SMTL ID : 2cu0.3 (2 other biounits)

Crystal structure of inosine-5'-monophosphate dehydrogenase from Pyrococcus horikoshii OT3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-octamer

Ligands

8 x XMP: XANTHOSINE-5'-MONOPHOSPHATE(Non-covalent)

XMP.1: 20 residues within 4Å: Chain A: A.53, M.55, G.298, S.299, I.300, C.301, T.303, D.334, G.335, G.336, M.355, L.356, G.357, N.358, Y.381, G.383, M.384, G.385, E.412, G.413 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:N.275, A:S.299, A:T.303, A:G.336, A:G.357, A:N.358, A:M.384, A:G.385, A:E.412 Water bridges: A:G.296, A:G.298, A:T.303, A:I.337, A:I.337, A:E.412, A:E.412 XMP.2: 21 residues within 4Å: Chain B: A.53, M.55, G.298, S.299, I.300, C.301, T.303, D.334, G.335, G.336, M.355, L.356, G.357, N.358, Y.381, G.383, M.384, G.385, S.386, E.412, G.413 16 PLIP interactions: 16 interactions with chain B Hydrogen bonds: B:S.299, B:S.299, B:G.336, B:G.357, B:N.358, B:Y.381, B:M.384, B:G.385, B:E.412 Water bridges: B:N.275, B:G.296, B:G.298, B:T.303, B:T.303, B:I.337, B:I.337 XMP.3: 20 residues within 4Å: Chain C: A.53, M.55, G.298, S.299, I.300, C.301, T.303, D.334, G.335, G.336, M.355, L.356, G.357, N.358, Y.381, G.383, M.384, G.385, E.412, G.413 16 PLIP interactions: 16 interactions with chain C Hydrogen bonds: C:N.275, C:S.299, C:T.303, C:G.336, C:G.357, C:N.358, C:M.384, C:G.385, C:E.412 Water bridges: C:G.296, C:G.298, C:T.303, C:I.337, C:I.337, C:E.412, C:E.412 XMP.4: 21 residues within 4Å: Chain D: A.53, M.55, G.298, S.299, I.300, C.301, T.303, D.334, G.335, G.336, M.355, L.356, G.357, N.358, Y.381, G.383, M.384, G.385, S.386, E.412, G.413 16 PLIP interactions: 16 interactions with chain D Hydrogen bonds: D:S.299, D:S.299, D:G.336, D:G.357, D:N.358, D:Y.381, D:M.384, D:G.385, D:E.412 Water bridges: D:N.275, D:G.296, D:G.298, D:T.303, D:T.303, D:I.337, D:I.337 XMP.5: 20 residues within 4Å: Chain E: A.53, M.55, G.298, S.299, I.300, C.301, T.303, D.334, G.335, G.336, M.355, L.356, G.357, N.358, Y.381, G.383, M.384, G.385, E.412, G.413 16 PLIP interactions: 16 interactions with chain E Hydrogen bonds: E:N.275, E:S.299, E:T.303, E:G.336, E:G.357, E:N.358, E:M.384, E:G.385, E:E.412 Water bridges: E:G.296, E:G.298, E:T.303, E:I.337, E:I.337, E:E.412, E:E.412 XMP.6: 21 residues within 4Å: Chain F: A.53, M.55, G.298, S.299, I.300, C.301, T.303, D.334, G.335, G.336, M.355, L.356, G.357, N.358, Y.381, G.383, M.384, G.385, S.386, E.412, G.413 16 PLIP interactions: 16 interactions with chain F Hydrogen bonds: F:S.299, F:S.299, F:G.336, F:G.357, F:N.358, F:Y.381, F:M.384, F:G.385, F:E.412 Water bridges: F:N.275, F:G.296, F:G.298, F:T.303, F:T.303, F:I.337, F:I.337 XMP.7: 20 residues within 4Å: Chain G: A.53, M.55, G.298, S.299, I.300, C.301, T.303, D.334, G.335, G.336, M.355, L.356, G.357, N.358, Y.381, G.383, M.384, G.385, E.412, G.413 16 PLIP interactions: 16 interactions with chain G Hydrogen bonds: G:N.275, G:S.299, G:T.303, G:G.336, G:G.357, G:N.358, G:M.384, G:G.385, G:E.412 Water bridges: G:G.296, G:G.298, G:T.303, G:I.337, G:I.337, G:E.412, G:E.412 XMP.8: 21 residues within 4Å: Chain H: A.53, M.55, G.298, S.299, I.300, C.301, T.303, D.334, G.335, G.336, M.355, L.356, G.357, N.358, Y.381, G.383, M.384, G.385, S.386, E.412, G.413 16 PLIP interactions: 16 interactions with chain H Hydrogen bonds: H:S.299, H:S.299, H:G.336, H:G.357, H:N.358, H:Y.381, H:M.384, H:G.385, H:E.412 Water bridges: H:N.275, H:G.296, H:G.298, H:T.303, H:T.303, H:I.337, H:I.337

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Asada, Y. et al., Crystal structure of inosine-5'-monophosphate dehydrogenase from Pyrococcus horikoshii OT3. To be Published

Release Date

2006-05-24

Peptides

Inosine-5'-monophosphate dehydrogenase: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

G
A

H
B

Inosine-5'-monophosphate dehydrogenase

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