SMTL ID : 2cv2.1 (1 other biounit)

Glutamyl-tRNA synthetase from Thermus thermophilus in complex with tRNA(Glu) and an enzyme inhibitor, Glu-AMS

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.69 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-functional Binders)

MG.1: 3 residues within 4Å: Chain A: C.9, A.45, A.46 No protein-ligand interaction detected (PLIP)

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 4 residues within 4Å: Chain B: H.15, S.245, K.246, R.247 Ligand excluded by PLIP

1 x GSU: O5'-(L-GLUTAMYL-SULFAMOYL)-ADENOSINE(Non-covalent)

GSU.3: 21 residues within 4Å: Chain A: A.75 Chain B: R.5, A.7, P.8, S.9, G.17, T.18, Y.20, I.21, E.41, Y.187, N.191, R.205, A.206, E.208, W.209, P.234, L.235, L.236, K.243, I.244 19 PLIP interactions: 19 interactions with chain B Hydrophobic interactions: B:A.7, B:Y.187, B:W.209 Hydrogen bonds: B:A.7, B:S.9, B:E.41, B:E.41, B:Y.187, B:Y.187, B:N.191, B:A.206, B:E.208, B:L.236, B:L.236 Water bridges: B:R.5, B:R.5, B:S.9 Salt bridges: B:R.5, B:R.205

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sekine, S. et al., Structural bases of transfer RNA-dependent amino acid recognition and activation by glutamyl-tRNA synthetase. Structure (2006)

Release Date

2006-09-05

Peptides

glutamyl-tRNA synthetase: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

B
A

glutamyl-tRNA synthetase

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