SMTL ID : 2cwf.1

Crystal Structure of delta1-piperideine-2-carboxylate reductase from Pseudomonas syringae complexed with NADPH

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NDP.1: 23 residues within 4Å: Chain A: H.54, H.126, A.128, A.129, L.130, S.150, T.166, P.168, V.182, F.183, D.184, L.185, A.186, A.191, R.309, P.311, G.312, D.313, R.314, R.315 Chain B: H.157, H.236, K.237 28 PLIP interactions: 23 interactions with chain A, 5 interactions with chain B Hydrophobic interactions: A:P.168 Hydrogen bonds: A:H.126, A:H.126, A:A.128, A:L.130, A:D.184, A:D.184, A:D.184, A:A.186, A:G.312, A:G.312, A:R.314 Water bridges: A:R.58, A:W.131, A:D.184, A:D.184, A:A.191, A:D.313, A:D.313, A:R.315, B:K.237, B:K.237 Salt bridges: A:R.309, A:R.314, B:H.236, B:K.237, B:K.237 pi-Cation interactions: A:R.309 NDP.2: 23 residues within 4Å: Chain A: H.157, H.236, K.237 Chain B: H.54, H.126, A.128, A.129, L.130, S.150, T.166, P.168, V.182, F.183, D.184, L.185, A.186, A.191, R.309, P.311, G.312, D.313, R.314, R.315 32 PLIP interactions: 24 interactions with chain B, 8 interactions with chain A Hydrophobic interactions: B:T.166, B:P.168 Hydrogen bonds: B:H.126, B:H.126, B:A.128, B:L.130, B:D.184, B:D.184, B:D.184, B:A.186, B:A.191, B:G.312, B:G.312, B:R.314, B:R.315 Water bridges: B:W.131, B:D.184, B:D.184, B:R.309, B:R.309, B:R.309, B:R.309, A:H.157, A:H.157, A:H.236, A:K.237 Salt bridges: B:R.309, A:H.236, A:K.237, A:K.237 pi-Cation interactions: B:R.309, A:H.236

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Goto, M. et al., Crystal structures of Delta1-piperideine-2-carboxylate/Delta1-pyrroline-2-carboxylate reductase belonging to a new family of NAD(P)H-dependent oxidoreductases: conformational change, substrate recognition, and stereochemistry of the reaction. J.Biol.Chem. (2005)

Release Date

2005-10-04

Peptides

delta1-piperideine-2-carboxylate reductase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

delta1-piperideine-2-carboxylate reductase

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