SMTL ID : 2cxt.1

Crystal structure of mouse AMF / F6P complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-dimer

Ligands

2 x F6P: 6-O-phosphono-beta-D-fructofuranose(Non-covalent)

F6P.1: 14 residues within 4Å: Chain A: I.157, G.158, G.159, S.160, S.210, K.211, T.212, T.215, Q.354, E.358, Q.512, V.515 Chain B: Q.388, H.389 17 PLIP interactions: 16 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:G.159, A:S.160, A:K.211, A:T.212, A:T.215, A:Q.354, A:E.358, B:Q.388 Water bridges: A:I.157, A:T.218, A:G.272, A:G.272, A:R.273, A:R.273, A:E.358, A:K.519, A:K.519 F6P.4: 14 residues within 4Å: Chain A: Q.388, H.389 Chain B: I.157, G.158, G.159, S.160, S.210, K.211, T.212, T.215, G.272, Q.354, E.358, V.515 16 PLIP interactions: 14 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:G.159, B:S.160, B:K.211, B:T.212, B:T.215, B:R.273, B:Q.354, B:E.358, A:Q.388, A:H.389 Water bridges: B:I.157, B:S.160, B:E.358, B:E.358, B:K.519, B:K.519

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: R.135, D.140, W.141, K.142, K.241 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.140, A:K.142, A:K.142, A:K.241 Water bridges: A:R.135 GOL.3: 6 residues within 4Å: Chain A: G.419, H.422, K.423, L.426 Chain B: I.549, R.553 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:G.419, A:K.423, B:R.553 GOL.5: 6 residues within 4Å: Chain A: I.549, R.553 Chain B: G.419, H.422, K.423, L.426 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:G.419, B:K.423, A:R.553 GOL.6: 4 residues within 4Å: Chain B: R.135, W.141, K.142, K.241 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.135, B:K.142, B:K.142

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tanaka, N. et al., Crystal structures of mouse autocrine motility factor in complex with carbohydrate phosphate inhibitors provide insight into structure-activity relationship of the inhibitors. J.Mol.Biol. (2006)

Release Date

2006-05-23

Peptides

Glucose-6-phosphate isomerase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glucose-6-phosphate isomerase

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