SMTL ID : 2cy3.1

CRYSTAL STRUCTURE OF CYTOCHROME C3 FROM DESULFOVIBRIO DESULFURICANS NORWAY AT 1.7 ANGSTROMS RESOLUTION

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

4 x HEC: HEME C(Covalent)

HEC.1: 20 residues within 4Å: Chain A: A.1, D.2, A.3, P.4, Y.8, I.10, F.34, H.36, H.39, V.42, E.43, C.44, C.47, H.48, V.58, K.60, C.61, F.88, Q.91 Ligands: HEC.3 18 PLIP interactions: 18 interactions with chain A, Hydrophobic interactions: A:A.3, A:Y.8, A:I.10, A:F.34, A:F.34, A:H.39, A:V.42, A:V.58, A:F.88 Hydrogen bonds: A:Y.8, A:Y.8, A:Y.8, A:C.61, A:T.62 Salt bridges: A:K.60, A:K.60 Metal complexes: A:H.36, A:H.48 HEC.2: 13 residues within 4Å: Chain A: C.47, H.48, H.49, T.50, K.59, K.60, C.61, C.66, H.67, I.81, A.87, T.90, Q.91 7 PLIP interactions: 7 interactions with chain A, Hydrophobic interactions: A:T.50, A:K.59, A:I.81, A:I.81, A:T.90 Metal complexes: A:H.49, A:H.67 HEC.3: 19 residues within 4Å: Chain A: V.32, P.33, F.34, P.35, K.38, H.39, V.42, Q.46, Q.91, C.92, C.95, H.96, L.99, P.105, T.106, G.107, P.108, C.114 Ligands: HEC.1 12 PLIP interactions: 12 interactions with chain A, Hydrophobic interactions: A:V.32, A:F.34, A:V.42, A:Q.91, A:L.99 Hydrogen bonds: A:T.106 Water bridges: A:T.106 Salt bridges: A:K.38 pi-Stacking: A:F.34, A:H.96 Metal complexes: A:H.39, A:H.96 HEC.4: 19 residues within 4Å: Chain A: I.10, S.11, A.12, L.28, Q.29, K.30, V.32, E.85, F.88, H.89, C.92, I.93, H.96, P.108, T.109, A.110, C.111, C.114, H.115 16 PLIP interactions: 16 interactions with chain A, Hydrophobic interactions: A:V.32, A:E.85, A:F.88, A:F.88, A:F.88, A:I.93, A:I.93, A:P.108 Hydrogen bonds: A:I.10, A:Q.29 Water bridges: A:A.12, A:A.12, A:Q.29 Salt bridges: A:H.115 Metal complexes: A:H.89, A:H.115

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Czjzek, M. et al., Crystal structure of cytochrome c3 from Desulfovibrio desulfuricans Norway at 1.7 A resolution. J.Mol.Biol. (1994)

Release Date

1994-10-15

Peptides

CYTOCHROME C3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CYTOCHROME C3