SMTL ID : 2cyb.1

Crystal structure of Tyrosyl-tRNA Synthetase complexed with L-tyrosine from Archaeoglobus fulgidus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x TYR: TYROSINE(Non-covalent)

TYR.1: 10 residues within 4Å: Chain A: Y.36, G.38, L.69, A.71, H.74, V.144, Y.158, Q.162, D.165, Q.180 9 PLIP interactions: 8 interactions with chain A, 1 Ligand-Ligand interactions Hydrophobic interactions: A:A.71 Hydrogen bonds: A:Y.158, A:Y.158, A:Q.162, A:Q.162, A:D.165, A:Q.180, Y.1 pi-Stacking: A:H.74 TYR.2: 10 residues within 4Å: Chain B: Y.36, G.38, L.69, A.71, H.74, V.144, Y.158, Q.162, D.165, Q.180 12 PLIP interactions: 11 interactions with chain B, 1 Ligand-Ligand interactions Hydrophobic interactions: B:Y.36, B:A.71 Hydrogen bonds: B:Y.36, B:Y.158, B:Q.162, B:Q.162, B:D.165, B:D.165, B:Q.180, Y.2 Water bridges: B:Y.158 pi-Stacking: B:H.74

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kuratani, M. et al., Crystal Structures of Tyrosyl-tRNA Synthetases from Archaea. J.Mol.Biol. (2006)

Release Date

2005-11-22

Peptides

Tyrosyl-tRNA synthetase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Tyrosyl-tRNA synthetase