SMTL ID : 2czl.1

Crystal structure of MqnD (TTHA1568), a menaquinone biosynthetic enzyme from Thermus thermophilus HB8 (Cys11 modified with beta-mercaptoethanol)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

monomer

Ligands

1 x K: POTASSIUM ION(Non-covalent)

K.1: 2 residues within 4Å: Chain A: F.149 Ligands: XPE.3 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:F.149

1 x TLA: L(+)-TARTARIC ACID(Non-covalent)

TLA.2: 9 residues within 4Å: Chain A: V.39, K.55, S.57, T.106, T.107, A.108, I.144, H.145, L.176 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:T.107, A:A.108, A:L.176 Water bridges: A:N.13, A:N.13, A:N.13, A:N.13, A:K.55, A:H.145 Salt bridges: A:K.55, A:H.145

1 x XPE: 3,6,9,12,15,18,21,24,27-NONAOXANONACOSANE-1,29-DIOL(Non-covalent)

XPE.3: 9 residues within 4Å: Chain A: R.148, F.149, Y.151, P.152, R.153, E.225, V.226, A.229 Ligands: K.1 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Arai, R. et al., Crystal structure of MqnD (TTHA1568), a menaquinone biosynthetic enzyme from Thermus thermophilus HB8. J.Struct.Biol. (2009)

Release Date

2006-01-13

Peptides

hypothetical protein TTHA1568: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

hypothetical protein TTHA1568

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