SMTL ID : 2d0d.1

Crystal Structure of a Meta-cleavage Product Hydrolase (CumD) A129V Mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

homo-dimer

Ligands

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 3 residues within 4Å: Chain A: S.34, S.103, F.104 Ligand excluded by PLIP CL.4: 3 residues within 4Å: Chain B: S.34, S.103, F.104 Ligand excluded by PLIP

4 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 5 residues within 4Å: Chain A: E.215, R.241 Chain B: R.249, Q.258, R.261 9 PLIP interactions: 3 interactions with chain A, 6 interactions with chain B Hydrogen bonds: A:E.215, B:Q.258 Water bridges: A:E.215, A:R.241, B:R.249, B:R.261, B:R.261, B:R.261 Salt bridges: B:R.261 PO4.3: 5 residues within 4Å: Chain A: D.121, R.122, E.215, R.241, A.273 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.241 Water bridges: A:D.121, A:D.121, A:R.241, A:R.241 Salt bridges: A:R.122 PO4.5: 5 residues within 4Å: Chain A: R.249, Q.258, R.261 Chain B: E.215, R.241 8 PLIP interactions: 6 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:Q.258, B:E.215 Water bridges: A:R.249, A:R.261, A:R.261, A:R.261, B:R.241 Salt bridges: A:R.261 PO4.6: 5 residues within 4Å: Chain B: D.121, R.122, E.215, R.241, A.273 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.241 Water bridges: B:R.241, B:R.241 Salt bridges: B:R.122

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jun, S.Y. et al., Improving the catalytic efficiency of a meta-cleavage product hydrolase (CumD) from Pseudomonas fluorescens IP01. Biochim.Biophys.Acta (2006)

Release Date

2006-06-06

Peptides

2-hydroxy-6-oxo-7-methylocta-2,4-dienoate hydrolase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

2-hydroxy-6-oxo-7-methylocta-2,4-dienoate hydrolase