SMTL ID : 2d16.3 (2 other biounits)

Crystal Structure of PH1918 protein from Pyrococcus horikoshii OT3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

homo-hexamer

Ligands

6 x NA: SODIUM ION(Non-functional Binders)

NA.1: 5 residues within 4Å: Chain A: I.130 Chain C: I.130 Chain E: I.130 Ligands: NA.5, NA.9 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:I.130 NA.3: 5 residues within 4Å: Chain B: I.130 Chain D: I.130 Chain F: I.130 Ligands: NA.7, NA.11 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain D Water bridges: B:I.130, D:I.130 NA.5: 5 residues within 4Å: Chain A: I.130 Chain C: I.130 Chain E: I.130 Ligands: NA.1, NA.9 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:I.130 NA.7: 5 residues within 4Å: Chain B: I.130 Chain D: I.130 Chain F: I.130 Ligands: NA.3, NA.11 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:I.130 NA.9: 5 residues within 4Å: Chain A: I.130 Chain C: I.130 Chain E: I.130 Ligands: NA.1, NA.5 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:I.130 NA.11: 5 residues within 4Å: Chain B: I.130 Chain D: I.130 Chain F: I.130 Ligands: NA.3, NA.7 1 PLIP interactions: 1 interactions with chain B Water bridges: B:I.130

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: L.37, V.40, P.41, G.42 Chain B: I.157, Y.159 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Water bridges: B:Y.159, B:Y.159 Hydrogen bonds: A:L.37, A:G.42 GOL.4: 7 residues within 4Å: Chain A: I.157, Y.159 Chain B: L.37, V.40, P.41, G.42, I.43 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:G.42 Water bridges: B:G.42, A:I.157, A:Y.159 GOL.6: 6 residues within 4Å: Chain C: L.37, V.40, P.41, G.42 Chain D: I.157, Y.159 4 PLIP interactions: 2 interactions with chain C, 2 interactions with chain D Hydrogen bonds: C:L.37, C:G.42 Water bridges: D:Y.159, D:Y.159 GOL.8: 7 residues within 4Å: Chain C: I.157, Y.159 Chain D: L.37, V.40, P.41, G.42, I.43 4 PLIP interactions: 2 interactions with chain C, 2 interactions with chain D Water bridges: C:I.157, C:Y.159, D:G.42 Hydrogen bonds: D:G.42 GOL.10: 6 residues within 4Å: Chain E: L.37, V.40, P.41, G.42 Chain F: I.157, Y.159 4 PLIP interactions: 2 interactions with chain E, 2 interactions with chain F Hydrogen bonds: E:L.37, E:G.42 Water bridges: F:Y.159, F:Y.159 GOL.12: 7 residues within 4Å: Chain E: I.157, Y.159 Chain F: L.37, V.40, P.41, G.42, I.43 4 PLIP interactions: 2 interactions with chain E, 2 interactions with chain F Water bridges: E:I.157, E:Y.159, F:G.42 Hydrogen bonds: F:G.42

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lokanath, N.K. et al., Crystal Structure of PH1918 protein from Pyrococcus horikoshii OT3. To be Published

Release Date

2006-10-31

Peptides

hypothetical protein PH1918: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

hypothetical protein PH1918

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