SMTL ID : 2d1e.1

Crystal structure of PcyA-biliverdin complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.51 Å

Oligo State

monomer

Ligands

1 x NA: SODIUM ION(Non-functional Binders)

NA.1: 2 residues within 4Å: Chain A: Y.48, E.50 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.48, A:Y.48

1 x BLA: BILIVERDINE IX ALPHA(Non-covalent)

BLA.2: 26 residues within 4Å: Chain A: E.76, I.86, H.88, C.89, V.90, G.103, C.104, D.105, V.107, S.114, A.115, I.117, R.149, L.151, P.152, W.154, F.158, F.164, Q.216, N.219, K.221, T.222, V.225, L.226, L.243, F.244 33 PLIP interactions: 33 interactions with chain A Hydrophobic interactions: A:I.86, A:I.86, A:V.90, A:D.105, A:V.107, A:A.115, A:I.117, A:I.117, A:L.151, A:W.154, A:F.158, A:F.158, A:F.164, A:K.221, A:K.221, A:T.222, A:V.225, A:V.225, A:L.226, A:L.243 Hydrogen bonds: A:D.105, A:D.105, A:D.105, A:D.105, A:S.114, A:R.149 Water bridges: A:R.149, A:K.221, A:K.221, A:T.222, A:T.222 Salt bridges: A:R.149, A:K.221

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hagiwara, Y. et al., Crystal structure of phycocyanobilin:ferredoxin oxidoreductase in complex with biliverdin IXalpha, a key enzyme in the biosynthesis of phycocyanobilin. Proc.Natl.Acad.Sci.Usa (2006)

Release Date

2006-01-24

Peptides

Phycocyanobilin:ferredoxin oxidoreductase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Phycocyanobilin:ferredoxin oxidoreductase

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