SMTL ID : 2d1y.1

Crystal structure of TT0321 from Thermus thermophilus HB8

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

homo-tetramer

Ligands

4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 28 residues within 4Å: Chain A: G.13, R.16, G.17, I.18, D.37, L.38, R.39, V.56, D.57, L.58, E.59, N.84, A.85, A.86, I.87, V.107, V.134, A.135, S.136, Y.149, K.153, P.179, G.180, A.181, I.182, T.184, A.186, V.187 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:P.179 Hydrogen bonds: A:G.13, A:R.16, A:I.18, A:L.38, A:R.39, A:D.57, A:L.58, A:E.59, A:N.84, A:A.86, A:K.153, A:I.182, A:I.182, A:T.184 Water bridges: A:R.16, A:G.19, A:R.39, A:N.84, A:A.186 Salt bridges: A:R.16 NAD.2: 28 residues within 4Å: Chain B: G.13, A.15, R.16, G.17, I.18, D.37, L.38, R.39, V.56, D.57, L.58, E.59, N.84, A.85, A.86, I.87, V.107, V.134, A.135, S.136, Y.149, K.153, P.179, G.180, A.181, I.182, T.184, V.187 21 PLIP interactions: 21 interactions with chain B Hydrophobic interactions: B:P.179 Hydrogen bonds: B:G.13, B:R.16, B:I.18, B:L.38, B:R.39, B:D.57, B:D.57, B:L.58, B:E.59, B:N.84, B:A.86, B:Y.149, B:K.153, B:I.182, B:T.184 Water bridges: B:G.19, B:R.39, B:E.59, B:N.84 Salt bridges: B:R.16 NAD.3: 28 residues within 4Å: Chain C: G.13, R.16, G.17, I.18, D.37, L.38, R.39, V.56, D.57, L.58, E.59, N.84, A.85, A.86, I.87, V.107, V.134, A.135, S.136, Y.149, K.153, P.179, G.180, A.181, I.182, T.184, A.186, V.187 25 PLIP interactions: 25 interactions with chain C Hydrophobic interactions: C:P.179 Hydrogen bonds: C:G.13, C:R.16, C:I.18, C:L.38, C:R.39, C:D.57, C:D.57, C:L.58, C:E.59, C:N.84, C:N.84, C:A.86, C:Y.149, C:K.153, C:I.182, C:I.182, C:T.184 Water bridges: C:R.16, C:G.19, C:G.19, C:R.39, C:E.185, C:A.186 Salt bridges: C:R.16 NAD.4: 29 residues within 4Å: Chain D: G.13, A.15, R.16, G.17, I.18, D.37, L.38, R.39, V.56, D.57, L.58, E.59, N.84, A.85, A.86, I.87, V.107, V.134, A.135, S.136, Y.149, K.153, P.179, G.180, A.181, I.182, T.184, A.186, V.187 21 PLIP interactions: 21 interactions with chain D Hydrophobic interactions: D:P.179 Hydrogen bonds: D:G.13, D:R.16, D:I.18, D:L.38, D:R.39, D:D.57, D:L.58, D:E.59, D:N.84, D:A.86, D:K.153, D:I.182, D:I.182, D:T.184 Water bridges: D:G.19, D:N.84, D:A.86, D:T.184, D:A.186 Salt bridges: D:R.16

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Asada, Y. et al., Biochemical and structural characterization of a short-chain dehydrogenase/reductase of Thermus thermophilus HB8: a hyperthermostable aldose-1-dehydrogenase with broad substrate specificity. Chem.Biol.Interact. (2009)

Release Date

2006-03-02

Peptides

hypothetical protein TT0321: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

hypothetical protein TT0321