SMTL ID : 2d29.1

Structural study on project ID TT0172 from Thermus thermophilus HB8

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

homo-tetramer

Ligands

4 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 25 residues within 4Å: Chain A: W.125, L.127, T.128, G.133, S.134, F.158, I.159, T.160, K.207, L.364, E.369, T.371, E.373, L.377 Chain B: E.285 Chain C: R.274, F.277, I.281, F.284, V.287, Q.342, I.343, G.345, G.346, Y.347 28 PLIP interactions: 20 interactions with chain A, 6 interactions with chain C, 2 interactions with chain B Hydrophobic interactions: A:F.158, A:K.207, A:L.364, A:L.364 Hydrogen bonds: A:W.125, A:L.127, A:T.128, A:T.128, A:T.128, A:G.133, A:S.134, A:S.134, A:T.160, A:E.369, A:T.371, A:E.373, C:Q.342, C:G.346, B:E.285 Water bridges: A:D.135, A:T.160, A:T.160, A:G.370, C:R.274, C:Y.347, B:E.285 Salt bridges: C:R.274, C:R.274 FAD.2: 25 residues within 4Å: Chain A: E.285 Chain B: W.125, L.127, T.128, G.133, S.134, Q.157, F.158, I.159, T.160, K.207, L.364, T.371, E.373, L.377 Chain D: R.274, F.277, I.281, F.284, V.287, Q.342, I.343, G.345, G.346, Y.347 25 PLIP interactions: 19 interactions with chain B, 5 interactions with chain D, 1 interactions with chain A Hydrophobic interactions: B:F.158, B:K.207, B:L.364, B:L.364 Hydrogen bonds: B:W.125, B:L.127, B:T.128, B:T.128, B:T.128, B:G.133, B:S.134, B:S.134, B:T.160, B:T.160, B:T.371, B:T.371, D:Q.342, D:G.346, A:E.285 Water bridges: B:S.132, B:D.135, B:G.370, D:R.274 Salt bridges: D:R.274, D:R.274 FAD.3: 25 residues within 4Å: Chain A: R.274, F.277, I.281, F.284, V.287, Q.342, I.343, G.345, G.346, Y.347 Chain C: W.125, L.127, T.128, G.133, S.134, F.158, I.159, T.160, K.207, L.364, E.369, T.371, E.373, L.377 Chain D: E.285 28 PLIP interactions: 6 interactions with chain A, 20 interactions with chain C, 2 interactions with chain D Hydrogen bonds: A:Q.342, A:G.346, C:W.125, C:L.127, C:T.128, C:T.128, C:T.128, C:G.133, C:S.134, C:S.134, C:T.160, C:E.369, C:T.371, C:E.373, D:E.285 Water bridges: A:R.274, A:Y.347, C:D.135, C:T.160, C:T.160, C:G.370, D:E.285 Salt bridges: A:R.274, A:R.274 Hydrophobic interactions: C:F.158, C:K.207, C:L.364, C:L.364 FAD.4: 25 residues within 4Å: Chain B: R.274, F.277, I.281, F.284, V.287, Q.342, I.343, G.345, G.346, Y.347 Chain C: E.285 Chain D: W.125, L.127, T.128, G.133, S.134, Q.157, F.158, I.159, T.160, K.207, L.364, T.371, E.373, L.377 25 PLIP interactions: 5 interactions with chain B, 19 interactions with chain D, 1 interactions with chain C Hydrogen bonds: B:Q.342, B:G.346, D:W.125, D:L.127, D:T.128, D:T.128, D:T.128, D:G.133, D:S.134, D:S.134, D:T.160, D:T.160, D:T.371, D:T.371, C:E.285 Water bridges: B:R.274, D:S.132, D:D.135, D:G.370 Salt bridges: B:R.274, B:R.274 Hydrophobic interactions: D:F.158, D:K.207, D:L.364, D:L.364

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shimizu, K. et al., Structural study on project ID TT0172 from Thermus thermophilus HB8. To be Published

Release Date

2006-03-05

Peptides

acyl-CoA dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

acyl-CoA dehydrogenase

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