SMTL ID : 2d43.1

Crystal structure of arabinofuranosidase complexed with arabinotriose

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 5 residues within 4Å: Chain A: D.157, N.185, T.187, T.412, K.413 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.413

2 x AHR- AHR: alpha-L-arabinofuranose-(1-5)-alpha-L-arabinofuranose(Non-covalent)

AHR-AHR.2: 6 residues within 4Å: Chain A: H.399, Y.400, N.401, F.402, Q.414, D.418 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.398, A:H.399, A:N.401, A:F.402, A:Q.414, A:D.418 AHR-AHR.3: 9 residues within 4Å: Chain A: T.339, Y.342, R.445, H.446, Y.447, E.448, N.449, T.466, D.471 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:R.445, A:H.446, A:E.448, A:N.449, A:N.449, A:S.467, A:D.471

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Miyanaga, A. et al., The family 42 carbohydrate-binding module of family 54 alpha-L-arabinofuranosidase specifically binds the arabinofuranose side chain of hemicellulose. Biochem.J. (2006)

Release Date

2006-09-19

Peptides

alpha-L-arabinofuranosidase B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

alpha-L-arabinofuranosidase B

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